Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1351 143 3e-29 >seq1351 Length=825266 Score = 143 bits (158), Expect = 3e-29 Identities = 168/225 (75%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 ||||||| ||| ||||||||| || ||||| || ||||| ||||||| |||||||| Sbjct 601394 CCTCATCCCTAGAAATAAGTTCATTACTGAAA--GTCAATCCGGGCATCAGACCTCGTTT 601451 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 ||| ||||||||||||| ||| || || || || ||||||||||||||||| ||||| Sbjct 601452 TTTCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAA 601511 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 || |||| ||||||||||| | ||| | ||| | ||||| | | ||||| || Sbjct 601512 AGCAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTC 601571 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 | || || |||| | | | ||||| |||||||||||||| Sbjct 601572 TGCCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAATAA 601616 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 || ||||| ||||| | ||| ||||| || || || | ||||| ||||| || ||| Sbjct 602227 ATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGA 602286 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049 |||||||| || || || ||||| | | ||| ||||| |||| | || ||||| Sbjct 602287 AAACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAAAAACGCTCCACCAAG 602346 Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109 || |||||||||||||||||| ||| ||||| ||||| || | | || ||||| | | Sbjct 602347 TTCTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTAAAACATGCTTGATAAAATGT 602406 Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 | ||| || || | | | | |||||| ||||| |||| Sbjct 602407 TTCTCACAATCTTTTAATGTCTCCCAATCTGCTAAGTCCT 602446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478563022010760