Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq3424 104 2e-17
seq1305 93.3 3e-14
seq2787 86.0 5e-12
>seq3424
Length=494560
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957
|| || ||||| | ||| |||||| || | ||| || || |||||||| ||| | ||
Sbjct 290190 AAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCT 290131
Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017
|||| ||| || ||||| ||||||| || |||||||| | || | ||||| || ||
Sbjct 290130 TCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 290071
Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077
||| | || || | | | |||||| |||||| || || | || ||||||
Sbjct 290070 TGAATCTTTGCCTTAACATTTTCTATTGTGTCAGAAGCCTCCACTTCCAAGGTAATAGTT 290011
Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| || || | ||||||||||||||||||||
Sbjct 290010 TTGCCAGTCAATGTTTTCACAAAAATTTGCAT 289979
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957
|| || ||||| | ||| |||||| || | ||| || || |||||||| ||| | ||
Sbjct 290418 AAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCT 290359
Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017
|||| ||| || ||||| ||||||| || |||||||| | || | ||||| || ||
Sbjct 290358 TCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTATCT 290299
Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077
||| | || || | | | ||| || ||| || || || | || ||||||
Sbjct 290298 TGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACCTCCAAAGTGATAGTT 290239
Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|| || || || || || |||||||||||||||
Sbjct 290238 TTCCCAGTCAGTGTCTTTACAAAAATTTGCATT 290206
>seq1305
Length=286731
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 42875 AATCGTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGT 42934
||| || ||||| || |||| | ||| | ||| | ||| |||||||| | ||||
Sbjct 24750 AATAGTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGT 24809
Query 42935 AATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGAT 42994
| || |||||||||||| | || || | |||||| || ||||| ||||| || || || |
Sbjct 24810 AGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGT 24869
Query 42995 CGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAG 43054
| | || | |||||| || || ||| |||| || | | | || ||| |
Sbjct 24870 CTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGG 24929
Query 43055 CCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|||| || || | || || ||||| || || || || || || ||||||||||||
Sbjct 24930 CCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 24985
>seq2787
Length=76071
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | || ||||| || | ||| || ||||| | ||| || || ||
Sbjct 39733 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 39674
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || ||| |||| |||||||| || || || |||||||| || |||||||| | ||
Sbjct 39673 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 39614
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||| || || || |||| || | ||| || ||| || || ||
Sbjct 39613 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 39554
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
|| | || || ||||| || || || ||||||||||| || ||||||||
Sbjct 39553 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 39504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381349572017922
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |