Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3345 533 2e-146 seq1351 105 9e-18 >seq3345 Length=207354 Score = 533 bits (590), Expect = 2e-146 Identities = 1094/1614 (68%), Gaps = 25/1614 (2%) Strand=Plus/Minus Query 70781 TTATTTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGAT 70840 ||||||| | ||||| | ||||||||||| | | | ||| | ||| || |||| | Sbjct 113397 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 113338 Query 70841 AGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 70900 ||||||| |||||||||| ||| | |||| ||| ||||| || ||| ||||| Sbjct 113337 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 113278 Query 70901 AATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCC 70960 |||| |||| | || | || || || | || |||||||| || || || ||||| | Sbjct 113277 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 113218 Query 70961 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 71019 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 113217 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 113158 Query 71020 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCA-ATAAT 71075 | |||| | |||| |||| ||| | |||| | || |||||| | || | ||||| Sbjct 113157 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGT-TGTATATAAT 113100 Query 71076 CCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGG 71135 |||||| || ||||||| ||| || | | || ||| | | || |||||| | Sbjct 113099 AAGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATG 113040 Query 71136 ATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGG 71195 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | || Sbjct 113039 GTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGG 112980 Query 71196 TTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255 ||| | || ||| | || || | |||||| ||||| || ||||||||||| || || | Sbjct 112979 TTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATTGGAGCTAT 112920 Query 71256 CAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCA 71315 ||||||| ||| | | ||||||| | || || ||||| || | |||| | ||| Sbjct 112919 CAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGGGCAGCCCAGTCCCA 112860 Query 71316 AAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA 71375 ||| || | || || || | || || Sbjct 112859 AAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGACT 112800 Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435 ||| |||||| ||||| ||||||||||| |||| ||||||||| || |||||||| Sbjct 112799 CCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAATGC 112740 Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495 ||||||||||| ||||| || || | | ||||||| | ||||| | || || | Sbjct 112739 ACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTA 112680 Query 71496 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCT 71555 | | | | | | |||||| ||||| | || ||||| |||||||| |||||||| Sbjct 112679 AGAAATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTCT 112620 Query 71556 GTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 |||||| |||| ||| ||| ||||| || | ||||||| |||||| ||| |||| ||| Sbjct 112619 ATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACTTT 112560 Query 71616 ATTGAGATTTCTGACTATTA--CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTC 71673 || | |||| ||| | | ||||| | || |||| ||| ||||| |||||| Sbjct 112559 GTTTAAATTT-TGAGTTACAATCTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAATCTA 112502 Query 71674 CCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 71733 || | ||||||| ||| | || | || || || || || || || || |||| Sbjct 112501 TTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCAT-- 112444 Query 71734 GCATCGGCA---TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 71790 | || | | ||||| | || |||||||||||||| ||||| || || || || | | Sbjct 112443 -CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGA 112385 Query 71791 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTT 71850 |||| ||||||||||||| ||||||| ||||||||||| | || | || |||||||| Sbjct 112384 TTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTC 112325 Query 71851 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTAT 71910 || | || | ||||||||| | ||||| | || |||| | | | || | || Sbjct 112324 TCTACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTTGTTTTATAAAT 112265 Query 71911 CTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-C 71969 | |||||| ||| |||| | ||||| | ||| || || ||||| ||||| | | Sbjct 112264 CGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AAGCAGTCAGC 112206 Query 71970 TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTT 72029 | |||||||| |||| |||||||| | ||| || |||| | | ||||| ||| Sbjct 112205 GAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTT 112146 Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 72089 |||||| ||||| || ||||| | || ||| || ||||| | ||| || || || Sbjct 112145 CATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTT 112086 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || || ||||| || | ||| | ||| | | || || | |||||| || || || || Sbjct 112085 ACCCGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCTGCATGCCAAGGCTCTAAATA 112026 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 || || | | || || ||||||||||| || ||||||| ||||| || || || || Sbjct 112025 AATCGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTT 111966 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 ||| |||||||||||||| | | |||||| || | ||||| || || | || || Sbjct 111965 ATACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGCCAGCTATGTAAGA 111906 Query 72270 TCCACTG-GCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 || ||| || | || | || || || |||||| || || || |||||| || Sbjct 111905 ACC-CTGAGCTCTGATGCAATGTGTAT--GTAAACCTATGCCACCAGCAGATTTAGAAAT 111849 Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 |||||| ||| ||||||| |||||| | || || || || ||||| || |||| Sbjct 111848 TAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCAT 111795 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 ||| || ||||| |||||||| || ||| ||||||||||||| ||||||||||| ||||| Sbjct 111270 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAATTGTA 111211 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTT 72671 | ||| |||| || |||| |||| | || | | ||| ||||| | ||| Sbjct 111210 TTTAAAATCTCTATCATAAACAATAGCAGAGTCTAATTTGTCCTTGTTTTT 111160 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 72772 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 || || || || || |||| ||| |||| ||||||||||| || | |||||||||||| Sbjct 110521 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 110462 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 110461 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 110402 Query 72892 GTTACTCCATTATATATTCC 72911 ||||| ||| |||||| || Sbjct 110401 GTTACACCAGAATATATGCC 110382 >seq1351 Length=825266 Score = 105 bits (116), Expect = 9e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || |||| |||||||||||| | |||||||| |||||||| || ||||||||||| | | Sbjct 602570 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 602629 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 || ||||| ||||||| |||||||| |||||||| | | |||||| Sbjct 602630 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTT 602677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671103050764840