Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3463 196 4e-45 seq3424 105 6e-18 seq2396 102 7e-17 seq2787 95.1 1e-14 seq1305 84.2 2e-11 >seq3463 Length=282612 Score = 196 bits (216), Expect = 4e-45 Identities = 607/927 (65%), Gaps = 27/927 (3%) Strand=Plus/Plus Query 100309 TTCGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCC 100368 ||| || |||| | | ||| || || || ||||||| |||||| || | || || || Sbjct 182038 TTCATTCGCAATCTCCCTATAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCC 182097 Query 100369 GGCAGCTGTGCCTGTGAA---ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACC 100425 | ||| |||||||||| | |||||| || || | ||||| |||||||| Sbjct 182098 AGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTTGTAAT---CATGAACGCCAGTCCAACC 182154 Query 100426 GCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAG 100485 || || ||||| ||||| || || | ||| || || | ||| ||||| || || Sbjct 182155 ACGACCATACATAGCAACACCTACTACAATCTTCTTAGGATTCACTCCCTG---CGCCAG 182211 Query 100486 CAA---TTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTA 100542 ||| ||| || || || | |||| || || || ||||| |||||||| Sbjct 182212 CAAGTATTTTACTCCGAAGTCAGATGTGTAAGTTTCCTTGGGATTCCACGCTGGCGCGTA 182271 Query 100543 GAGAGTGGTTTGGTAGCCCAAATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCAT 100602 | | ||||| | || | | | ||||||||||| || || || ||||| ||||| Sbjct 182272 CAATGGCGTTTGATGTCCAAGAGTGTCATTTGACCAGGCTCCCTTGAAGTCGTAACTCAT 182331 Query 100603 -AAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGT 100661 |||||| || | ||| | | ||||| || | | || | ||| || ||||| | Sbjct 182332 CAAGAAA-ATATGATCCATATAATTTTGAGCCTTGCCATAGTCTACAACTTGGATTTTAT 182390 Query 100662 CATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGT-AGC 100720 | | || | || || || || || ||||| | || || | | || || ||| Sbjct 182391 CCCATCCAGCGCTAATAGCAGAAGTTAATTCGTATTTCTTACCATTCTT-AGCTGAGAGC 182449 Query 100721 TGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCC 100780 | ||| |||||| | || ||||| |||| ||| | || || | || || Sbjct 182450 TCGTCGAGCATCTCACGTAATTCTTTCATCAAACTTACATAACAATCACCATCT---TCT 182506 Query 100781 CCGTTGCCAAGAGTC-GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCAC 100839 | | || || ||| ||||| || |||||||| || || |||||||| || || || || Sbjct 182507 GGGCTACCGAG-GTCAGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAAC 182565 Query 100840 GCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCG 100899 || || || || ||||| | | ||| ||||| || || | |||||| || Sbjct 182566 ACCATCGAAGAATTTCCATGTTAGAAGAAACTCCTTTACTGACTGCACAAAT---CGTGT 182622 Query 100900 TTTTTCCGCATCGTGCATGAAATAGAAC---GGGTCGGACAACGTCCAGCCGCCGATGGA 100956 | | | | | || | ||| |||| || |||| | |||||| || || || || Sbjct 182623 TCTCTTAGATTTGTCAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGA 182682 Query 100957 CGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCC 101016 || ||||| || | | || ||| | || | ||||| || || || ||||| Sbjct 182683 GGGAAGAATCTTCAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCC 182742 Query 101017 CTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGG 101076 ||||| ||||||||||||| |||| || ||||| |||||||||| ||| ||||| || Sbjct 182743 TTTGTAAGGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGG 182802 Query 101077 ATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAA 101136 |||||| || | ||||||||| || ||| || | ||||| ||||| || |||| || Sbjct 182803 ATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAA 182862 Query 101137 ACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAA 101196 |||||| || ||| | || |||| |||||| ||||||||||| || || || Sbjct 182863 ACTGCCTTCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGGATAAA 182922 Query 101197 CCCGTACAACAGATGCGAGAGATTGGG 101223 ||||| | || ||| | ||||| || Sbjct 182923 GCCGTAGAGCAAATGAGTAAGATTAGG 182949 >seq3424 Length=494560 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||||| ||||| |||||||||||||| ||||| | || ||| | || || Sbjct 289276 CACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTC 289217 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||||||| || ||| ||||||| ||||| || || || | ||| |||||||| Sbjct 289216 CAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTG 289157 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | ||||| || |||| ||| | || || ||||| Sbjct 289156 AATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATAGTTTT 289097 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || || ||||| ||||||||| Sbjct 289096 GCCAGTCAGTGTCTTTACAAATATTTGCATT 289066 Score = 100 bits (110), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || || || | |||||| ||||| || || ||||| |||||||| | Sbjct 289067 TTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG 289008 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 289007 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 288952 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | |||||||| || ||||||| ||| || | | | ||||| |||| Sbjct 288951 GGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGC 288892 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||| | || || || || || || | || || || |||||||||||| Sbjct 288891 TCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCATT 288838 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || | |||| |||||| || || ||||| ||||||||||| || | Sbjct 289523 TTCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAG 289464 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 289463 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 289408 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | |||||||| || ||||||| || || | | | ||||| || Sbjct 289407 GGGGGAATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT 289348 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| ||| | || || || || || || | || || ||||||||||||||| Sbjct 289347 TCCACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 289294 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || | |||| ||||| ||||| ||||| ||||||||||| || | Sbjct 289751 TTCCACCTCTCAGCCGCAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG 289692 Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 | ||| |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 289691 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 289636 Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988 ||| | ||||||||| || ||||||| || || | | | ||||| || Sbjct 289635 GGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT 289576 Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| ||| | || || || || || || | || || ||||| ||||||||| Sbjct 289575 TCCACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289522 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCAG 18894 ||||| ||||||||||| || ||||| || |||| || ||| |||||| ||||| Sbjct 290181 TGCAAAGTAGACTCCTTCTGGATATTATAGTCCGACAATGT----GCGTCCATCTTCCAG 290126 Query 18895 CTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAAT 18954 || || || || |||| ||||| || ||||| || | ||| || ||||| ||| Sbjct 290125 TTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAAT 290066 Query 18955 TTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACC 19014 || || || | | | || || || |||| ||| | |||||| ||||| || Sbjct 290065 CTTTGCCTTAACATTTTCTATTGTGTCAGAAGCCTCCACTTCCAAGGTAATAGTTTTGCC 290006 Query 19015 TGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| |||||||||||||| Sbjct 290005 AGTCAATGTTTTCACAAAAATTTGCAT 289979 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 ||| || | |||||| ||||| ||||| || ||||| || || | | ||| | || Sbjct 288823 TAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAGAGTGTGCGCCCATC 288764 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 |||| || || || || |||| ||||| || ||||| || | ||| || ||||| Sbjct 288763 TTCCAATTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTC 288704 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 ||| || ||||| | ||| ||||| || ||| ||| | || ||||| Sbjct 288703 TTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGT 288644 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCTCTTATAAA 19058 ||| || ||||||||||| || || |||||||| | ||||| | | ||| Sbjct 288643 TTTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATGAATCTGTAAAAAA 288594 >seq2396 Length=191974 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 ||||| || ||||| || |||||||| || || || || || ||||||||||| Sbjct 136398 CGCAAGAAAGGGCACTGAGGCGCCCAGCGCTGGTGGTCCTTGGCGGGATCGTCGCCCGCA 136339 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| |||||| || ||||| |||||||||||||| ||||| |||||||| |||| Sbjct 136338 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGA 136279 Query 25350 TAGTAGAACCCATT 25363 || ||||| ||||| Sbjct 136278 TAATAGAAGCCATT 136265 >seq2787 Length=76071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| || || ||||| || | || || | || |||| || ||||| Sbjct 40387 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAATTGCTTACCA 40328 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| | ||||||||| || | |||||||||||| ||||| |||| Sbjct 40327 GCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTT 40268 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| || ||| ||| | ||||||||| || || |||| ||| Sbjct 40267 ACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTT 40208 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||| ||||| Sbjct 40207 TTAACAAAAATCTGCAT 40191 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| |||||||||||||| ||||| | | ||| | | || || || ||||| || Sbjct 39931 GTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCTTCTAGTTGTTTTCCA 39872 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| ||||||| ||||| ||||| ||| | ||||||||||| || || || Sbjct 39871 GCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTTTGCCTTC 39812 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| ||| ||| ||||| || | || |||||||| ||||| | ||| Sbjct 39811 ACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTC 39752 Query 19025 TTGACAAAAATTTGCATT 19042 || ||||| || |||||| Sbjct 39751 TTAACAAAGATCTGCATT 39734 >seq1305 Length=286731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| || || ||||||||||| ||||| || | || ||| | || || || ||| Sbjct 24782 TGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGT 24841 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| ||| | || | | ||||| || || | || || || || ||||| Sbjct 24842 TTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTA 24901 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 |||||| | | | ||||||| | |||| |||| ||||||||||||||| || Sbjct 24902 GCTTTTACATTTTCTATAGTATCGGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTA 24961 Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042 | || ||||| |||||||||||| Sbjct 24962 AGGGTCTTGACGAAAATTTGCATT 24985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414551028320746