Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq3463 196 4e-45
seq3424 105 6e-18
seq2396 102 7e-17
seq2787 95.1 1e-14
seq1305 84.2 2e-11
>seq3463
Length=282612
Score = 196 bits (216), Expect = 4e-45
Identities = 607/927 (65%), Gaps = 27/927 (3%)
Strand=Plus/Plus
Query 100309 TTCGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCC 100368
||| || |||| | | ||| || || || ||||||| |||||| || | || || ||
Sbjct 182038 TTCATTCGCAATCTCCCTATAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCC 182097
Query 100369 GGCAGCTGTGCCTGTGAA---ATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACC 100425
| ||| |||||||||| | |||||| || || | ||||| ||||||||
Sbjct 182098 AGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTTGTAAT---CATGAACGCCAGTCCAACC 182154
Query 100426 GCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAG 100485
|| || ||||| ||||| || || | ||| || || | ||| ||||| || ||
Sbjct 182155 ACGACCATACATAGCAACACCTACTACAATCTTCTTAGGATTCACTCCCTG---CGCCAG 182211
Query 100486 CAA---TTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTA 100542
||| ||| || || || | |||| || || || ||||| ||||||||
Sbjct 182212 CAAGTATTTTACTCCGAAGTCAGATGTGTAAGTTTCCTTGGGATTCCACGCTGGCGCGTA 182271
Query 100543 GAGAGTGGTTTGGTAGCCCAAATCGGTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCAT 100602
| | ||||| | || | | | ||||||||||| || || || ||||| |||||
Sbjct 182272 CAATGGCGTTTGATGTCCAAGAGTGTCATTTGACCAGGCTCCCTTGAAGTCGTAACTCAT 182331
Query 100603 -AAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGT 100661
|||||| || | ||| | | ||||| || | | || | ||| || ||||| |
Sbjct 182332 CAAGAAA-ATATGATCCATATAATTTTGAGCCTTGCCATAGTCTACAACTTGGATTTTAT 182390
Query 100662 CATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTGCAGTTGT-AGC 100720
| | || | || || || || || ||||| | || || | | || || |||
Sbjct 182391 CCCATCCAGCGCTAATAGCAGAAGTTAATTCGTATTTCTTACCATTCTT-AGCTGAGAGC 182449
Query 100721 TGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCC 100780
| ||| |||||| | || ||||| |||| ||| | || || | || ||
Sbjct 182450 TCGTCGAGCATCTCACGTAATTCTTTCATCAAACTTACATAACAATCACCATCT---TCT 182506
Query 100781 CCGTTGCCAAGAGTC-GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCAC 100839
| | || || ||| ||||| || |||||||| || || |||||||| || || || ||
Sbjct 182507 GGGCTACCGAG-GTCAGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAAC 182565
Query 100840 GCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCG 100899
|| || || || ||||| | | ||| ||||| || || | |||||| ||
Sbjct 182566 ACCATCGAAGAATTTCCATGTTAGAAGAAACTCCTTTACTGACTGCACAAAT---CGTGT 182622
Query 100900 TTTTTCCGCATCGTGCATGAAATAGAAC---GGGTCGGACAACGTCCAGCCGCCGATGGA 100956
| | | | | || | ||| |||| || |||| | |||||| || || || ||
Sbjct 182623 TCTCTTAGATTTGTCAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGA 182682
Query 100957 CGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCC 101016
|| ||||| || | | || ||| | || | ||||| || || || |||||
Sbjct 182683 GGGAAGAATCTTCAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCC 182742
Query 101017 CTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGG 101076
||||| ||||||||||||| |||| || ||||| |||||||||| ||| ||||| ||
Sbjct 182743 TTTGTAAGGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGG 182802
Query 101077 ATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAA 101136
|||||| || | ||||||||| || ||| || | ||||| ||||| || |||| ||
Sbjct 182803 ATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAA 182862
Query 101137 ACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAA 101196
|||||| || ||| | || |||| |||||| ||||||||||| || || ||
Sbjct 182863 ACTGCCTTCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGGATAAA 182922
Query 101197 CCCGTACAACAGATGCGAGAGATTGGG 101223
||||| | || ||| | ||||| ||
Sbjct 182923 GCCGTAGAGCAAATGAGTAAGATTAGG 182949
>seq3424
Length=494560
Score = 105 bits (116), Expect = 6e-18
Identities = 150/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| |||||| ||||| |||||||||||||| ||||| | || ||| | || ||
Sbjct 289276 CACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTC 289217
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
||||||||| || ||| ||||||| ||||| || || || | ||| ||||||||
Sbjct 289216 CAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTG 289157
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|||||| || || | | | ||||| || |||| ||| | || || |||||
Sbjct 289156 AATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATAGTTTT 289097
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| || | || || ||||| |||||||||
Sbjct 289096 GCCAGTCAGTGTCTTTACAAATATTTGCATT 289066
Score = 100 bits (110), Expect = 2e-16
Identities = 163/234 (70%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| |||| || || || || | |||||| ||||| || || ||||| |||||||| |
Sbjct 289067 TTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG 289008
Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928
| ||| |||||| || ||||| || || ||| |||||||||| ||||||||
Sbjct 289007 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 288952
Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988
||| | |||||||| || ||||||| ||| || | | | ||||| ||||
Sbjct 288951 GGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGC 288892
Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| ||| | || || || || || || | || || || ||||||||||||
Sbjct 288891 TCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCATT 288838
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/234 (69%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| |||| || || | |||| |||||| || || ||||| ||||||||||| || |
Sbjct 289523 TTCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAG 289464
Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928
| ||| |||||| || ||||| || || ||| |||||||||| ||||||||
Sbjct 289463 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 289408
Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988
||| | |||||||| || ||||||| || || | | | ||||| ||
Sbjct 289407 GGGGGAATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT 289348
Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
||| ||| | || || || || || || | || || |||||||||||||||
Sbjct 289347 TCCACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 289294
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/234 (69%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| |||| || || | |||| ||||| ||||| ||||| ||||||||||| || |
Sbjct 289751 TTCCACCTCTCAGCCGCAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG 289692
Query 18873 CCATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928
| ||| |||||| || ||||| || || ||| |||||||||| ||||||||
Sbjct 289691 ATAGTGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCT 289636
Query 18929 ACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC 18988
||| | ||||||||| || ||||||| || || | | | ||||| ||
Sbjct 289635 GGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT 289576
Query 18989 TCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
||| ||| | || || || || || || | || || ||||| |||||||||
Sbjct 289575 TCCACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289522
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/207 (70%), Gaps = 8/207 (4%)
Strand=Plus/Minus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCAG 18894
||||| ||||||||||| || ||||| || |||| || ||| |||||| |||||
Sbjct 290181 TGCAAAGTAGACTCCTTCTGGATATTATAGTCCGACAATGT----GCGTCCATCTTCCAG 290126
Query 18895 CTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAAT 18954
|| || || || |||| ||||| || ||||| || | ||| || ||||| |||
Sbjct 290125 TTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAAT 290066
Query 18955 TTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACC 19014
|| || || | | | || || || |||| ||| | |||||| ||||| ||
Sbjct 290065 CTTTGCCTTAACATTTTCTATTGTGTCAGAAGCCTCCACTTCCAAGGTAATAGTTTTGCC 290006
Query 19015 TGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || ||||| ||||||||||||||
Sbjct 290005 AGTCAATGTTTTCACAAAAATTTGCAT 289979
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888
||| || | |||||| ||||| ||||| || ||||| || || | | ||| | ||
Sbjct 288823 TAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAGAGTGTGCGCCCATC 288764
Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948
|||| || || || || |||| ||||| || ||||| || | ||| || |||||
Sbjct 288763 TTCCAATTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTC 288704
Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008
||| || ||||| | ||| ||||| || ||| ||| | || |||||
Sbjct 288703 TTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGT 288644
Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCTCTTATAAA 19058
||| || ||||||||||| || || |||||||| | ||||| | | |||
Sbjct 288643 TTTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATGAATCTGTAAAAAA 288594
>seq2396
Length=191974
Score = 102 bits (112), Expect = 7e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289
||||| || ||||| || |||||||| || || || || || |||||||||||
Sbjct 136398 CGCAAGAAAGGGCACTGAGGCGCCCAGCGCTGGTGGTCCTTGGCGGGATCGTCGCCCGCA 136339
Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349
|||| |||||| || ||||| |||||||||||||| ||||| |||||||| ||||
Sbjct 136338 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGA 136279
Query 25350 TAGTAGAACCCATT 25363
|| ||||| |||||
Sbjct 136278 TAATAGAAGCCATT 136265
>seq2787
Length=76071
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||||||||| || || ||||| || | || || | || |||| || |||||
Sbjct 40387 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAATTGCTTACCA 40328
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| | ||||| | ||||||||| || | |||||||||||| ||||| ||||
Sbjct 40327 GCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTT 40268
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | |||||| || ||| ||| | ||||||||| || || |||| |||
Sbjct 40267 ACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTT 40208
Query 19025 TTGACAAAAATTTGCAT 19041
|| |||||||| |||||
Sbjct 40207 TTAACAAAAATCTGCAT 40191
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||| |||||||||||||| ||||| | | ||| | | || || || ||||| ||
Sbjct 39931 GTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCTTCTAGTTGTTTTCCA 39872
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| ||||||| ||||| ||||| ||| | ||||||||||| || || ||
Sbjct 39871 GCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTTTGCCTTC 39812
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | ||| ||| ||| ||||| || | || |||||||| ||||| | |||
Sbjct 39811 ACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTC 39752
Query 19025 TTGACAAAAATTTGCATT 19042
|| ||||| || ||||||
Sbjct 39751 TTAACAAAGATCTGCATT 39734
>seq1305
Length=286731
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898
||||| || || ||||||||||| ||||| || | || ||| | || || || |||
Sbjct 24782 TGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGT 24841
Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
||||| ||| | || | | ||||| || || | || || || || |||||
Sbjct 24842 TTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTA 24901
Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018
|||||| | | | ||||||| | |||| |||| ||||||||||||||| ||
Sbjct 24902 GCTTTTACATTTTCTATAGTATCGGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTA 24961
Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042
| || ||||| ||||||||||||
Sbjct 24962 AGGGTCTTGACGAAAATTTGCATT 24985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414551028320746
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |