Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq2787 129 4e-25
seq1305 102 5e-17
seq3424 91.5 9e-14
>seq2787
Length=76071
Score = 129 bits (142), Expect = 4e-25
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||| ||||| || | || || |||||||| ||||| || ||||| | | || || |
Sbjct 39721 CGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCG 39662
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| ||||||||||||||| || || |||||||| || || | || |||||||| ||
Sbjct 39661 TCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTG 39602
Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334
|| ||| |||||| ||| ||| || ||| |||| ||| |||| ||| ||
Sbjct 39601 TCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATG 39542
Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375
||||| |||||||| ||||| || || || ||||| || ||
Sbjct 39541 GTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGAT 39501
Score = 104 bits (114), Expect = 1e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
||| || |||| || |||||||| || |||||||||||||||||| || | || ||
Sbjct 40856 CACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 40797
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279
||||||||||||| ||| || | |||||| ||||| | ||| ||||| || || ||
Sbjct 40796 CAATTGCTTTCCAGCAAAAATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCCTG 40737
Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339
|| ||| || | | || ||||| |||| || ||||| || || || ||
Sbjct 40736 TATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTT 40677
Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||| || | ||||| || || ||||||||
Sbjct 40676 TCCAGTCAATGTTTTGACAAATATTTGCAT 40647
Score = 102 bits (112), Expect = 5e-17
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| |||||||| || | || || ||||| || || |||||||| || ||||| |||||
Sbjct 40190 ACCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGA 40131
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|| | | || || |||||||| || ||| || | |||||| || |||| ||
Sbjct 40130 CAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGG 40071
Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
||||||||||| || | | | || ||| || ||| ||| ||||| | ||
Sbjct 40070 AATGCCTTCTTTGTCTTGGATTTTAGC---TTTCACATTTTCAATTGTGTCAGAAGCTTC 40014
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||| || | ||| || |||||||| || || ||||| || || ||||||||
Sbjct 40013 AACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 39963
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
||||| || | ||||||||||| || |||||||| ||||||| || | || |||
Sbjct 41083 ACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCC 41024
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
| ||| || ||| || || | |||||| || || | || || ||||| || || |
Sbjct 41023 AGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 40964
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| ||| || ||| ||| ||||| || | ||| |||| |||||| ||||||
Sbjct 40963 ATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAAGTTATTGTTTTT 40904
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| ||||| || || ||||||||
Sbjct 40903 CCAGTAAGTGTTTTGACAAATATTTGCAT 40875
Score = 89.7 bits (98), Expect = 3e-13
Identities = 159/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| |||| | |||| || | ||| | || ||||| || || || ||||| |||||
Sbjct 40418 ACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 40359
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|| || | || ||||||||||| ||| ||| || | ||| ||||| || | ||
Sbjct 40358 CAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 40299
Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
||||| ||||| || | | | || |||||| ||| ||| || || |||||
Sbjct 40298 GATGCCCTCTTTGTCTTGGATTTTAGC---TTTTACATTTTCAATAGTATCAGAGGGTTC 40242
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || || ||||| || || ||||| || ||||| |||||
Sbjct 40241 CACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191
Score = 89.7 bits (98), Expect = 3e-13
Identities = 159/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| |||| | |||| || ||||| | || ||||||||||| || ||||| |||||
Sbjct 40646 ACCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGA 40587
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
|| || | || || | ||||| ||| ||| || | |||||| || || | |||
Sbjct 40586 CAGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGG 40527
Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
|| || ||||| || |||| |||| |||| ||| ||| ||||| || |
Sbjct 40526 AATACCCTCTTTATCTTGAATCTTAGCCT---TTACATTTTCAATGGTGTCAGATGGCTC 40470
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||||||||| || || || || || || || || || ||||||||
Sbjct 40469 CACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 40419
>seq1305
Length=286731
Score = 102 bits (112), Expect = 5e-17
Identities = 151/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219
||| | ||||||||| || || ||||| || ||||| |||||||| | || || ||
Sbjct 24775 CACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTC 24834
Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTC 33276
| ||| || ||| ||| || |||||||||||||| | || || ||||| || ||
Sbjct 24835 TAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTG 24894
Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336
| | | || |||||| ||| || || ||| || | || || || || || ||
Sbjct 24895 GATTTTAGC---TTTTACATTTTCTATAGTATCGGAGGCCTCCACCTCGAGGGTAATGGT 24951
Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||| |||||||| || || ||||||||||||||
Sbjct 24952 TTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 24984
>seq3424
Length=494560
Score = 91.5 bits (100), Expect = 9e-14
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||||| ||||| || |||||||| || ||||| || || ||||| || || |||
Sbjct 290433 CCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGAC 290374
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
|| || || || |||| ||||||||| || || | | ||| || || | ||
Sbjct 290373 AATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 290314
Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
|||||||| || || |||| |||| | || ||| || || || | ||
Sbjct 290313 ATGCCTTCCTTATCTTGAATCTTTGCCT---TAACATTTTCTATTGTATCAGAAGCTTCC 290257
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| |||| ||| || ||||| || || || || ||||| |||||||||||
Sbjct 290256 ACCTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 290207
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | ||| | || | ||||| || || ||||| || || |||||||||||
Sbjct 289065 CCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGAT 289006
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
| || || || || | ||||||||| ||| || | | |||||| || | |||
Sbjct 289005 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 288946
Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322
|| || ||||| || ||| | ||| || ||| ||| || || || | |||
Sbjct 288945 ATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAACT 288886
Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|||| ||| || || || || || || || |||||||||||||||||
Sbjct 288885 TCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCAT 288839
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/230 (68%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | ||||| |||| ||||| || || || || || |||||||| |||||
Sbjct 289521 CCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGAT 289462
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
| || || || || | ||||||||| ||| || | | |||||| || | |||
Sbjct 289461 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 289402
Query 33263 ATGCCTTCTTTTTCGCTAAT---CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
|| || ||||| || ||| ||||| | || ||| ||| || || | ||
Sbjct 289401 ATACCCTCTTTATCCTGAATTTTCGCCT---TAACATTTTCAATTGTATCAGAAGCTTCC 289345
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| |||| ||| || || || || || || || ||||| |||||||||||
Sbjct 289344 ACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 289295
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/230 (68%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||||| ||||| || |||||||| || ||||| || || ||||| || || |||
Sbjct 290205 CCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGAC 290146
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
|| || || || |||| ||||||||| || || | | ||| || || | ||
Sbjct 290145 AATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 290086
Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
|||||||| || || |||| |||| | || ||| || ||||| | |
Sbjct 290085 ATGCCTTCCTTGTCTTGAATCTTTGCCT---TAACATTTTCTATTGTGTCAGAAGCCTCC 290029
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| |||| || || ||||| || || | ||||| || |||||||||||
Sbjct 290028 ACTTCCAAGGTAATAGTTTTGCCAGTCAATGTTTTCACAAAAATTTGCAT 289979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318760859095482
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