Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1305 105 5e-18 seq3424 102 6e-17 seq2787 102 6e-17 >seq1305 Length=286731 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || |||||||| || || || ||| ||| |||| || | |||||| || ||||| Sbjct 24794 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAG 24853 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||||||||| | || | |||||| |||||| ||||| ||| || | Sbjct 24854 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTT 24913 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | |||||| | | |||||| |||| ||||| |||||||| || | ||||| || Sbjct 24914 TCTATAGTATCGGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACG 24973 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 24974 AAAATTTGCAT 24984 >seq3424 Length=494560 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || ||||||||||||||||| | | ||| |||| |||| |||||||||||||| Sbjct 289257 TCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAA 289198 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | || || ||||| |||| | |||||||| ||| ||||||| || || | Sbjct 289197 ATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTT 289138 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | |||||| || | || || ||||| || || | ||||| ||| Sbjct 289137 TCTATTGTATCAGAAGCCTCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACA 289078 Query 44111 AATATTTGCAT 44121 ||||||||||| Sbjct 289077 AATATTTGCAT 289067 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||| | | || ||||||| || ||||| |||||||| || || | Sbjct 289977 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGAT 289918 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | ||| |||| || | ||| ||||| ||||| || | || ||| ||||| |||| Sbjct 289917 AGTGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGA 289858 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| |||||| |||||| || || | | | || || | ||||| || Sbjct 289857 ATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACT 289798 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || || | |||||||||||||||||||| Sbjct 289797 TCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTCACAAATATTTGCAT 289751 >seq2787 Length=76071 Score = 102 bits (112), Expect = 6e-17 Identities = 163/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATC 43968 || ||||| || || || ||||||||||||||||| || | | || || | || Sbjct 39718 AATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTG-CGTCCGTC 39660 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 |||||||| ||||| || || ||||| ||||| || || |||| | ||||| || || Sbjct 39659 TTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 39600 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| ||| || | ||| |||||| | || || || || | ||||| || Sbjct 39599 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 39540 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCTTTGTAACA 44138 |||||| || | || |||||||| || ||||| | || | | ||||||| Sbjct 39539 TTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGA-TATCTGTAACA 39491 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || || |||||||| || || ||||||||||||||||| |||| ||| |||| Sbjct 39946 AATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCT 39887 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | ||||||||| ||||| || | || || || || | || | ||| ||||| ||| Sbjct 39886 TCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCT 39827 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || ||| || || | | | ||| || | |||||| || || | || || ||| Sbjct 39826 TGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTT 39767 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || | |||||| ||||| || ||||| Sbjct 39766 TTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 39735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354758968521732