Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq1305 105 5e-18
seq3424 102 6e-17
seq2787 102 6e-17
>seq1305
Length=286731
Score = 105 bits (116), Expect = 5e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990
|| |||||||| || || || ||| ||| |||| || | |||||| || |||||
Sbjct 24794 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAG 24853
Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050
||||| ||||||||||| | || | |||||| |||||| ||||| ||| || |
Sbjct 24854 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTT 24913
Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110
| | |||||| | | |||||| |||| ||||| |||||||| || | ||||| ||
Sbjct 24914 TCTATAGTATCGGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACG 24973
Query 44111 AATATTTGCAT 44121
|| ||||||||
Sbjct 24974 AAAATTTGCAT 24984
>seq3424
Length=494560
Score = 102 bits (112), Expect = 6e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990
|| ||||||||||||||||| | | ||| |||| |||| ||||||||||||||
Sbjct 289257 TCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAA 289198
Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050
|| | || || ||||| |||| | |||||||| ||| ||||||| || || |
Sbjct 289197 ATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTT 289138
Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110
| | ||||| | | |||||| || | || || ||||| || || | ||||| |||
Sbjct 289137 TCTATTGTATCAGAAGCCTCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACA 289078
Query 44111 AATATTTGCAT 44121
|||||||||||
Sbjct 289077 AATATTTGCAT 289067
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954
|| ||||||| | | || ||||||| || ||||| |||||||| || || |
Sbjct 289977 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGAT 289918
Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014
| | ||| |||| || | ||| ||||| ||||| || | || ||| ||||| ||||
Sbjct 289917 AGTGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGA 289858
Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074
| ||||| |||||| |||||| || || | | | || || | ||||| ||
Sbjct 289857 ATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACT 289798
Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | || || || || || || | ||||||||||||||||||||
Sbjct 289797 TCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTCACAAATATTTGCAT 289751
>seq2787
Length=76071
Score = 102 bits (112), Expect = 6e-17
Identities = 163/230 (71%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATC 43968
|| ||||| || || || ||||||||||||||||| || | | || || | ||
Sbjct 39718 AATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTG-CGTCCGTC 39660
Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028
|||||||| ||||| || || ||||| ||||| || || |||| | ||||| || ||
Sbjct 39659 TTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 39600
Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088
| |||||| ||| || | ||| |||||| | || || || || | ||||| ||
Sbjct 39599 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 39540
Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTCTTTGTAACA 44138
|||||| || | || |||||||| || ||||| | || | | |||||||
Sbjct 39539 TTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGA-TATCTGTAACA 39491
Score = 95.1 bits (104), Expect = 9e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|| || |||||||| || || ||||||||||||||||| |||| ||| ||||
Sbjct 39946 AATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCT 39887
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
|| | ||||||||| ||||| || | || || || || | || | ||| ||||| |||
Sbjct 39886 TCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCT 39827
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
|| ||| || || | | | ||| || | |||||| || || | || || |||
Sbjct 39826 TGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTT 39767
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || | |||||| ||||| || |||||
Sbjct 39766 TTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 39735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354758968521732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |