Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq3463 223 3e-53
seq3424 98.7 8e-16
seq2787 98.7 8e-16
>seq3463
Length=282612
Score = 223 bits (246), Expect = 3e-53
Identities = 638/971 (66%), Gaps = 29/971 (3%)
Strand=Plus/Plus
Query 101017 ATAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA 101076
||| || || || ||||||| |||||| || | || || || | ||| ||||||||||
Sbjct 182056 ATAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAA 182115
Query 101077 ---ATAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAAC 101133
| |||||| || || | || ||||| |||||||| || || ||||| |||||
Sbjct 182116 GGGAATGTTGTCTTTGTAAT--CATGA-ACGCCAGTCCAACCACGACCATACATAGCAAC 182172
Query 101134 GCCCACAATAATTTTGCGCGGGTCTACGCCCTGGTTCGTGAGCGA---TTTAACAGCGTA 101190
|| || | ||| || || | || ||||| || ||| | ||| || || |
Sbjct 182173 ACCTACTACAATCTTCTTAGGATTCACTCCCTG---CGCCAGCAAGTATTTTACTCCGAA 182229
Query 101191 ATCCGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCC 101250
|| | |||| || || || ||||| |||||||| | || ||||||| ||
Sbjct 182230 GTCAGATGTGTAAGTTTCCTTGGGATTCCACGCTGGCGCGTACAATGGCGTTTGATGTCC 182289
Query 101251 CAGATCGATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAG 101310
||| | |||||||| || || ||||| ||||| ||||| | || || | ||| |
Sbjct 182290 AAGAGTGTCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCAT 182349
Query 101311 GAACTTTTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGC 101370
| ||||| || | || | ||| || ||||| || || | ||||| ||
Sbjct 182350 ATAATTTTGAGCCTTGCCATAGTCTACAACTTGGATTTTATCCCATCCAGCGCTAATAGC 182409
Query 101371 ACTTGTTAATTCGTATGTTTTGCCCGTTTGCAGTTGCAA-CTCGTCCAGCATTGCGCGCA 101429
| |||||||||||| | || || | | || || | |||||| ||||| | || |
Sbjct 182410 AGAAGTTAATTCGTATTTCTTACCATTCTT-AGCTGAGAGCTCGTCGAGCATCTCACGTA 182468
Query 101430 ATTCTTTCAGTAAAATGTTGTACGTGTCAGCGTCGCGTTCTTTGTTGCCGAGTGTTGGGT 101489
||||||||| ||| | || ||| | || |||| | | ||||| ||||
Sbjct 182469 ATTCTTTCATCAAACTTACATAACAATCACCATC---TTCTGGGCTACCGAGGTCAGGGT 182525
Query 101490 TGGCGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAA 101549
| || ||||| ||||| || |||||||||||||| || || || || || ||||||||
Sbjct 182526 TAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATG 182585
Query 101550 CCTGCAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATC---GCGTCGTGCA 101606
| | ||| || || || || | |||||| ||| || || | | || |
Sbjct 182586 TTAGAAGAAACTCCTTTACTGACTGCACAAAT------CGTGTTCTCTTAGATTTGTCAA 182639
Query 101607 -TATAAT--AGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGT 101663
|| || |||| || |||| | ||||| || || || || || | ||| || | |
Sbjct 182640 CTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATT 182699
Query 101664 GTGGATTGGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCC 101723
|| ||| ||| | ||||| || ||||||||||||||||| ||||||||||
Sbjct 182700 CAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAAGGCTCGTTCC 182759
Query 101724 AAGCAGATACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTT 101783
| | ||| | ||||| || |||||||||| ||| ||||| ||||||||||| | ||||
Sbjct 182760 ATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTT 182819
Query 101784 TAAAATCTGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTT 101843
| || || |||||| || || || || | |||| ||||| || || ||
Sbjct 182820 TGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTT 182879
Query 101844 TGAGGGCGTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGTG 101903
| | || || | ||| || ||||| ||||| || || || ||||| | |||||| |
Sbjct 182880 TTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGGATAAAGCCGTAGAGCAAATGAG 182939
Query 101904 AGAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCTA 101963
|| || || | || | ||||| || || || | | ||| || ||||||||||
Sbjct 182940 TAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTA 182999
Query 101964 CAAAATACGCA 101974
| || || |||
Sbjct 183000 CGAAGTAGGCA 183010
>seq3424
Length=494560
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055
|| |||||| || | |||||||| ||||| || || ||||| || || |||
Sbjct 289279 CAGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATC 289220
Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115
||||| ||||| || ||| |||||||||||||||| || || | ||||||||||||
Sbjct 289219 TTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC 289160
Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175
||||||| || || | | | | ||| || ||| ||||| || || ||
Sbjct 289159 TTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATAGT 289100
Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|||||| |||| || || ||||| |||||||||
Sbjct 289099 TTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289066
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
|||| |||| || | ||| || ||||| | ||||| || || || || || || ||
Sbjct 290207 TTCCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCG 290148
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
|| || |||||||| ||| || || || |||| || || |||||||| |
Sbjct 290147 ACAATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAG 290088
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | |||||| ||||| ||| ||| || || | | | | || || |||
Sbjct 290087 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCTATTGTGTCAGAAGCCTCCA 290028
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
||||| |||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 290027 CTTCCAAGGTAATAGTTTTGCCAGTCAATGTTTTCACAAAAATTTGCAT 289979
>seq2787
Length=76071
Score = 98.7 bits (108), Expect = 8e-16
Identities = 161/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039
|||| || || | | ||| ||||| || || |||||||||||||| || || || ||
Sbjct 39735 TTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAG 39676
Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
| ||| ||||||||||| || || || |||| | | |||||||| |
Sbjct 39675 AAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAG 39616
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | |||||| ||||| |||||| ||| || | ||| || |||| ||||||
Sbjct 39615 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 39556
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211
||||| ||||||||||| || || | ||||| ||||| || ||||||||
Sbjct 39555 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 39504
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCC 20071
|||||||||||||| |||||||| || || || | |||||| ||||| ||||||
Sbjct 40159 GTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCTTCTAATTGCTTGCCC 40100
Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131
||| ||||||| | |||||||| || | |||||||||||| ||||| ||||
Sbjct 40099 GCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTC 40040
Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191
|| | ||| | || || ||| ||| | ||||| ||||| || || | |||
Sbjct 40039 ACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTT 39980
Query 20192 TTGACAAAAATTTGCAT 20208
|| ||||| ||||||||
Sbjct 39979 TTAACAAAGATTTGCAT 39963
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|| ||||| | | || || | ||| || ||||| || || || |||||||| || |
Sbjct 40417 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 40358
Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101
| || | |||||||||||| || || ||| | ||||| | ||| ||||| ||
Sbjct 40357 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 40298
Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161
| ||| |||||||| ||||| ||| || | ||| || ||| |||||| |
Sbjct 40297 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 40238
Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|||| ||||||||| || || || | ||||| |||||||| |||||
Sbjct 40237 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041
|| || || | || ||| || |||||||| |||||||| ||||| || || |||||
Sbjct 39961 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAG-- 39904
Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099
||| | | | |||||| | |||||| || ||| ||||||||||||||||||| ||
Sbjct 39903 ATAATGTACGGCCATCTTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGG 39844
Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159
| | || |||||||| || ||| ||||| | | | || ||| || ||
Sbjct 39843 GAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTA 39784
Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209
|| | || |||||||| || || | || || ||||| || ||||||
Sbjct 39783 CCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 39734
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058
||| || || || || || ||||| || || |||||||| || ||| | ||||||
Sbjct 40856 CACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 40797
Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118
|||||| || || ||| |||| || | ||||| || ||| | ||| || || ||
Sbjct 40796 CAATTGCTTTCCAGCAAAAATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCCTG 40737
Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178
||||| ||| || | | | | || ||||| ||||| ||||||||| ||
Sbjct 40736 TATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTT 40677
Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208
|| ||||| ||||||||||| ||||||||
Sbjct 40676 TCCAGTCAATGTTTTGACAAATATTTGCAT 40647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419565164984829
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