Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq3463 196 4e-45 seq1305 95.1 1e-14 >seq3463 Length=282612 Score = 196 bits (216), Expect = 4e-45 Identities = 782/1209 (65%), Gaps = 53/1209 (4%) Strand=Plus/Minus Query 30232 TACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGA-CTTAGTTCCCGTCCC 30290 ||||| ||||| |||||||| || || ||| || | || | || | || | || Sbjct 183006 TACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTA-TACCTATACC 182948 Query 30291 CAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGA 30350 || ||||| ||| | | || |||||| | || | ||||| || || || || || || Sbjct 182947 TAATCTTACTCATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGTGACGGCATCAATGA 182888 Query 30351 TAGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGA 30410 ||| ||||| | | || || | || |||| || || || || || Sbjct 182887 TAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGTGA 182828 Query 30411 GGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGT 30470 ||| || ||||| | || |||||| |||| || | |||||||||||||||||| | Sbjct 182827 GGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATT 182768 Query 30471 GGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGACA 30530 | | ||| |||| || || ||||| || ||||||||| | ||| | | |||| | Sbjct 182767 GTCTTCATGGAACGAGCCTTACAAAGGCAACTTTGGCCAATTAATGTC-ACTAAA----A 182713 Query 30531 CAATCCCGACC-----TTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCT 30585 ||| |||| || | | |||| | || |||||||| |||||||| ||| ||| ||| Sbjct 182712 CAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCT 182653 Query 30586 TTCTTTAAATTGAGTTCTGCCGAA---AATCGCGC-CGTTTTCGTTGAGTCCGCACGAGA 30641 ||| || || ||| || | || || | | || ||| || |||| | | || Sbjct 182652 TTC-TTCTTTTTAGT--TGACAAATCTAAGAGAACACGATTT-GTGCAGTCAGTAAAGGA 182597 Query 30642 GTATTTGCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGG 30701 || | | | ||||||||||| || || || | || ||||| |||||||| || || || Sbjct 182596 GTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGG 182537 Query 30702 TAAAGGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTT 30761 ||||||||||| || || | || |||||| ||||| | ||||| || Sbjct 182536 CAAAGGTGCTAACCCTGACCTCGGTAGCCCAGAA---GATGGTGATTGTTATGTAAGTTT 182480 Query 30762 ATTGAAAGAGCTCAGAGAAATGCTAAACGATCTTTC--TAAAGAAACAGGGAAAAAATAC 30819 ||||||| | | || ||||| |||| || || ||||| || || |||||| Sbjct 182479 GATGAAAGAATTACGTGAGATGCTCGACGAGCTCTCAGCTAAGAA--TGGTAAGAAATAC 182422 Query 30820 CAGCTCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTTAATTATGAAAAT 30879 | | || || || |||||||| || | ||||||||| | || | |||| || Sbjct 182421 GAATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTAGACTATGGCAAG 182362 Query 30880 GCGCAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCT 30939 || ||| | ||| | ||||| ||||| | |||| ||||| || || || || ||||| Sbjct 182361 GCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCA 182302 Query 30940 AA-CACGGACTTGGGATATCACACTACACTTTATTCACCCTCTTGGAACGCTGAAGAAAA 30998 || || ||| ||| |||| || || | || | || | ||||| | | |||| Sbjct 182301 AATGACACTCTT-GGACATCAAACGCCATTGTACGCGCCAGCGTGGAATCCCAAGGAAAC 182243 Query 30999 ATATACTGCCGAGTACGCGACAAAGGAGTTGTTAAAACAAAACGTCAATAGTAAGAAAAT 31058 || || | || | || ||| | ||| | || || ||| |||||| || Sbjct 182242 TTACACATCTGACTTCGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGAT 182183 Query 31059 AGTGCTAGCTGTTGCAATGTACGGAAGAGGGTGGACGGGTGTGCATGACATAAAAAACAA 31118 || ||| |||||| ||||| || | || ||||| || || ||||| ||| |||| Sbjct 182182 TGTAGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGTTCATGATTACAAAGACAA 182123 Query 31119 CAATCCCTTTACGGGTGTAGCTCAGGGGCCGATTAAAGGAACTTGGGAAAGTGGAGTTGT 31178 || |||||| || || ||| || || | |||||||||||| || ||||| || Sbjct 182122 CATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGGT 182063 Query 31179 AGATTACA--AAGATT-----TGATA----CAAAGGTACACCGACACTT--ATTATGACT 31225 || || | ||||| ||| | |||| | | | | || |||| ||| Sbjct 182062 TGACTATAGGGAGATTGCGAATGAAATCGCTCAAGGCA-AGTGGGAGTTCCATTACGACA 182004 Query 31226 CTGTAGCGCAAGCGGCATATGCGTTCGCAGAGAAT--GTTGGTGATCTACTTACTTACGA 31283 ||| || ||||| | || ||| |||| || ||| ||||| | || || || Sbjct 182003 ATGTCGCCCAAGCCCCTTA--CGTCTTCAGACCATCAACTGGAGATCTTGTAACCTATGA 181946 Query 31284 TAACCC---AACGAGTGTGCAAGCTAAGGGAAAGTTTGTAATAGACAACAATTTGGGTGG 31340 ||| | | || | | || ||||| || | ||||| | | ||||| | ||||| Sbjct 181945 TAATGCTAGATCGGTTATTGAA---AAGGGTAAATATGTAAGAAATAACAAGCTAGGTGG 181889 Query 31341 TTTGTTTGCGTGGGAACTGGACGCCGACAATGGCGACATTCTTAACAGCATGAACGAGGG 31400 | | ||||| |||||| ||||||| || || || ||| | || || ||||||| ||| Sbjct 181888 TCTCTTTGCTTGGGAAGTGGACGCTGATAACGGTGACCTACTGAATGCCATGAACATGGG 181829 Query 31401 TTTAGGTAA 31409 | | ||||| Sbjct 181828 TCTCGGTAA 181820 >seq1305 Length=286731 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | | ||| | ||| | |||| ||||||||||||||||| |||| Sbjct 24757 ACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGA 24816 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | || || || || ||||| | | || ||||| ||||| || || Sbjct 24817 CAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGG 24876 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||| || ||||| || | | |||| ||||||| | |||| Sbjct 24877 AATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTCCAC 24936 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||||||||| || || || || || ||||| ||||| ||| Sbjct 24937 CTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTG 24988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421229077598309