Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1778 129 3e-25 seq1463 129 3e-25 seq579 127 1e-24 seq3453 125 4e-24 seq1336 123 1e-23 seq869 122 5e-23 seq2197 120 2e-22 seq2286 116 2e-21 seq1763 116 2e-21 seq1345 114 7e-21 seq3489 93.3 2e-14 >seq1778 Length=102347 Score = 129 bits (142), Expect = 3e-25 Identities = 87/97 (90%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||||||| |||| ||| ||||||||||| |||||||||| ||||||||||||||| Sbjct 41379 AATTAATATAAAAGAAAAGTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 41320 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||||| |||||||||||||||||||||| Sbjct 41319 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 41283 Score = 127 bits (140), Expect = 1e-24 Identities = 91/103 (88%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAA--TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 |||| || ||||||| ||||| | | |||||||||||| |||||||||| ||||||| Sbjct 37297 AAAT-TACAATTAATTAAAAAGATAACATTGGCCCATGAGGGGATCGAACCCGCGACCTT 37355 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 37356 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 37398 Score = 122 bits (134), Expect = 5e-23 Identities = 89/102 (87%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||| ||||| || | |||||| | ||||||||||| |||||||||| |||||||| Sbjct 27782 AAATTTAGAAAAAAAATAAAAAT--ATTTGGCCCATGAGGGGATCGAACCCGCGACCTTC 27725 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||||||||||||||||||| Sbjct 27724 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 27683 Score = 122 bits (134), Expect = 5e-23 Identities = 85/97 (88%), Gaps = 4/97 (4%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||| | ||||||| ||| ||||||||||| |||||||||| ||||||||||||| Sbjct 29432 AATTTAAAAAAAATAAAAATATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTT 29373 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||||||||| Sbjct 29372 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 29336 Score = 122 bits (134), Expect = 5e-23 Identities = 84/94 (89%), Gaps = 4/94 (4%) Strand=Plus/Plus Query 11441 AATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| ||| ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 38769 AATAAAAAGATC---TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 38825 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||||||| ||||||||||||||||||||| || Sbjct 38826 CGACGCTCTAACCAACTGAGCTAATGGGCCGACG 38859 Score = 116 bits (128), Expect = 2e-21 Identities = 80/91 (88%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||| Sbjct 27012 TTATTAAAAATT----TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 26957 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 26956 ACGACGCTCTAACCAACTGAGCTAATGGGCC 26926 Score = 98.7 bits (108), Expect = 5e-16 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11467 AGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGG 11526 || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 44768 AGAATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGG 44709 Query 11527 GCC 11529 ||| Sbjct 44708 GCC 44706 >seq1463 Length=61254 Score = 129 bits (142), Expect = 3e-25 Identities = 87/97 (90%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||| |||||||||| | ||||||||||| |||||||||| |||||||||||||| Sbjct 49248 AGAATAAATAAAAAATATTACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTA 49189 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||| ||||||||||||||||||||| Sbjct 49188 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 49152 >seq579 Length=29693 Score = 127 bits (140), Expect = 1e-24 Identities = 82/89 (92%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| || ||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 16808 TAAAAAATTAA-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 16750 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||| |||||||||||||||||||||| Sbjct 16749 CGCTCTAACCAACTGAGCTAATGGGCCGT 16721 >seq3453 Length=538689 Score = 125 bits (138), Expect = 4e-24 Identities = 79/86 (92%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 528331 AAAAAGGAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 528272 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||||||||||||||||| Sbjct 528271 CTCTAACCAACTGAGCTAATGGGCCG 528246 >seq1336 Length=24493 Score = 123 bits (136), Expect = 1e-23 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 23397 TAAAAAATTTGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 23338 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 23337 CGCTCTAACCAACTGAGCTAATGGGCC 23311 >seq869 Length=61017 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 49611 AAAAAAGAAGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 49670 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 49671 GCTCTAACCAACTGAGCTAATGGGCC 49696 >seq2197 Length=48374 Score = 120 bits (132), Expect = 2e-22 Identities = 80/90 (89%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| ||||||||||| |||||||||| |||||||||||||||||||| | Sbjct 23510 ATAAAAAATAGTCTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCATG 23569 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||| |||||||||||||||||||||| Sbjct 23570 ACGCTCTAACCAACTGAGCTAATGGGCCGT 23599 >seq2286 Length=98244 Score = 116 bits (128), Expect = 2e-21 Identities = 76/83 (92%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 37488 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 37547 Query 11516 TGAGCTAATGGGCC-GTCGACGA 11537 |||||||||||||| || ||||| Sbjct 37548 TGAGCTAATGGGCCAGTGGACGA 37570 Score = 102 bits (112), Expect = 4e-17 Identities = 77/89 (87%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||| |||| || |||||| |||| || |||||| ||||||||||||||||||||| Sbjct 31180 AATAACAAAT-AACTTGGCCTATGAGGGG-TCGAACTCGCGACCTTCGCGTTATTAGCAC 31123 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||| |||||| Sbjct 31122 GACGCTCTAACCAACTGAGCTAGTGGGCC 31094 >seq1763 Length=512502 Score = 116 bits (128), Expect = 2e-21 Identities = 79/88 (90%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | | |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 398677 AAAAAATGTATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 398618 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 398617 CGCTCTAACCAACTGAGCTAATGGGCCG 398590 >seq1345 Length=52608 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 9682 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9741 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 9742 TGAGCTAATGGGCCG 9756 >seq3489 Length=1325285 Score = 93.3 bits (102), Expect = 2e-14 Identities = 64/74 (86%), Gaps = 7/74 (9%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| ||||||||||| ||||||||||||||||||||||| |||||| Sbjct 802954 TGGCCCATGAGGGGATCGAACCT-------TCGCGTTATTAGCACGACGCTCTAACCAAC 803006 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 803007 TGAGCTAATGGGCC 803020 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261477467544484