Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_006144.1 Length=34246 Score E Sequences producing significant alignments: (Bits) Value seq3063 349 8e-92 >seq3063 Length=7092 Score = 349 bits (386), Expect = 8e-92 Identities = 332/422 (79%), Gaps = 2/422 (0%) Strand=Plus/Plus Query 10877 GGTGAGCGCGTACGAGCAAACGGTCAAGGAGGAGATGAACTTCCAGAAGAGCTTCAATCA 10936 ||| | |||||||||||| ||||| || ||||||| ||||| || || ||||| || | Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731 Query 10937 TCACGTGCGCACGCTGATCGCGCGCGAAGAGGTGGCGATTGGCCTCATGCATCTGTGGGA 10996 |||||||||||||| | |||||||| |||||||| || || || |||||||||||||| Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791 Query 10997 TTTTGTGGAGGCGTACGTTCAGAACCCCAGCAGCAAGCCGCTGACGGCTCAGCTGTTCCT 11056 ||||| ||| | || ||||| | ||||||||||| | ||| ||||||||||| Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851 Query 11057 CATCGTGCAACACAGTCGGGACAACGAGACGTTCAGGGAGGCCATGCTGAACATCGCGGA 11116 || ||||| ||||| ||||||||||| | |||||||| || |||| ||||| | || Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911 Query 11117 GCCGGAGGGGCGCTGGCTCTTGGATCTCATTAACATCTTGCAGAGTATCGTAGTGCAGGA 11176 ||| ||||| |||||||| | ||| | || ||||| ||||||| || || |||||||| Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971 Query 11177 GCGCTCGCTT-AGCCTGGCCGACAAGGTGGCCGCCATCAACTACAGCATGCTGTCGCTGG 11235 |||| |||| |||||||| ||||||||||||||||| ||||| |||||| |||| Sbjct 6972 GCGC-AGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGG 7030 Query 11236 GCAAATTTTACGCCCGCAAAATCTACAAGTCTCCGTTCGTCCCCATCGACAAGGAGGTGA 11295 |||| |||||||||||||| || ||| | | || | ||| ||||| ||||||||||| | Sbjct 7031 GCAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAA 7090 Query 11296 AG 11297 || Sbjct 7091 AG 7092 Score = 93.3 bits (102), Expect = 9e-15 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 15055 CAGCACCCCGTACGAGTGCGCGGACACTTTAGAGCTCCCTGGGGGTCGCACACGCGCGGG 15114 || ||||| || || |||||||| |||| | || |||||||| |||||| ||||| Sbjct 42 CAACACCCAGTGCGCGTGCGCGGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGC 101 Query 15115 CGCACTGGCCGAACCACCGTCGACGACGTGATCGATAGCGTGGTGGCCGACGCCCGCAAC 15174 |||||||| || ||||||||||| |||| || || ||||||| || || |||||| Sbjct 102 CGCACTGGGCGCACCACCGTCGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAAC 161 Query 15175 TACCAGCCC 15183 ||| |||| Sbjct 162 TACACGCCC 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109459998713664