Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1366 125 1e-24
seq3931 122 1e-23
seq3928 122 1e-23
seq3890 122 1e-23
seq3094 122 1e-23
seq3068 122 1e-23
seq3039 122 1e-23
seq3865 118 2e-22
seq2646 114 2e-21
>seq1366
Length=601710
Score = 125 bits (138), Expect = 1e-24
Identities = 185/262 (71%), Gaps = 0/262 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| || ||| | | | || | || ||||||||||| |||||||| ||||||||
Sbjct 176976 CGCTAAACGCCATAGAAAAGTACTCAGGGACAACATCCAAGGCATCACCAAACCAGCTAT 176917
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | | || | ||||| ||||| ||||| | || || || | || ||||| |
Sbjct 176916 AAGAAGATTAGCAAGACGTGGCGGAGTTAAGCGCATTTCCGGTTTAATTTACGAAGAAAC 176857
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||||||||||| || || | | || ||| ||||| | ||||| ||
Sbjct 176856 CCGCGGAGTTTTGAAGATTTTTCTAGAAAATGTCATCAGAGATGCCGTAACTTATACTGA 176797
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||||| | |||||||| ||| |||||||| | || || ||||||||| | || ||
Sbjct 176796 ACACGCTAAAAGGAAGACTGTTACCGCCATGGATGTGGTTTACGCATTGAAAAGACAGGG 176737
Query 16672 CCGTAAGATTTATGGTTTTGGA 16693
||| | | ||||| ||||||
Sbjct 176736 CCGCACTTTGTATGGATTTGGA 176715
>seq3931
Length=1145
Score = 122 bits (134), Expect = 1e-23
Identities = 192/275 (70%), Gaps = 0/275 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| | | | || || || |||||||| || ||||| ||||| || |||
Sbjct 1066 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 1007
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || || | || || ||||| ||| | || || || | || || |||| |
Sbjct 1006 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 947
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | |||||| ||| || |||| || || || || || |||
Sbjct 946 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 887
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| |||||| ||||||| |||| || || |||| || || ||
Sbjct 886 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGGCAGGGG 827
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707
|| | | || || || || |||||| || |||
Sbjct 826 CGCACTCTGTACGGCTTCGGCGGTTAATATTTTAA 792
>seq3928
Length=1036
Score = 122 bits (134), Expect = 1e-23
Identities = 192/275 (70%), Gaps = 0/275 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| | | | || || || |||||||| || ||||| ||||| || |||
Sbjct 877 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 818
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || || | || || ||||| ||| | || || || | || || |||| |
Sbjct 817 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 758
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | |||||| ||| || |||| || || || || || |||
Sbjct 757 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 698
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| |||||| ||||||| |||| || || |||| || || ||
Sbjct 697 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGGCAGGGG 638
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707
|| | | || || || || |||||| || |||
Sbjct 637 CGCACTCTGTACGGCTTCGGCGGTTAATATTTTAA 603
>seq3890
Length=1225
Score = 122 bits (134), Expect = 1e-23
Identities = 192/275 (70%), Gaps = 0/275 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| | | | || || || |||||||| || ||||| ||||| || |||
Sbjct 250 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 309
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || || | || || ||||| ||| | || || || | || || |||| |
Sbjct 310 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 369
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | |||||| ||| || |||| || || || || || |||
Sbjct 370 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 429
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| |||||| ||||||| |||| || || |||| || || ||
Sbjct 430 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGGCAGGGG 489
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707
|| | | || || || || |||||| || |||
Sbjct 490 CGCACTCTGTACGGCTTCGGCGGTTAATATTTTAA 524
>seq3094
Length=1096
Score = 122 bits (134), Expect = 1e-23
Identities = 192/275 (70%), Gaps = 0/275 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| | | | || || || |||||||| || ||||| ||||| || |||
Sbjct 968 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 909
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || || | || || ||||| ||| | || || || | || || |||| |
Sbjct 908 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 849
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | |||||| ||| || |||| || || || || || |||
Sbjct 848 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 789
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| |||||| ||||||| |||| || || |||| || || ||
Sbjct 788 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGGCAGGGG 729
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707
|| | | || || || || |||||| || |||
Sbjct 728 CGCACTCTGTACGGCTTCGGCGGTTAATATTTTAA 694
>seq3068
Length=1291
Score = 122 bits (134), Expect = 1e-23
Identities = 192/275 (70%), Gaps = 0/275 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| | | | || || || |||||||| || ||||| ||||| || |||
Sbjct 759 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 700
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || || | || || ||||| ||| | || || || | || || |||| |
Sbjct 699 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 640
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | |||||| ||| || |||| || || || || || |||
Sbjct 639 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 580
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| |||||| ||||||| |||| || || |||| || || ||
Sbjct 579 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGGCAGGGG 520
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707
|| | | || || || || |||||| || |||
Sbjct 519 CGCACTCTGTACGGCTTCGGCGGTTAATATTTTAA 485
>seq3039
Length=1324
Score = 122 bits (134), Expect = 1e-23
Identities = 192/275 (70%), Gaps = 0/275 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| | | | || || || |||||||| || ||||| ||||| || |||
Sbjct 563 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 622
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || || | || || ||||| ||| | || || || | || || |||| |
Sbjct 623 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 682
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | |||||| ||| || |||| || || || || || |||
Sbjct 683 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 742
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| |||||| ||||||| |||| || || |||| || || ||
Sbjct 743 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGGCAGGGG 802
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707
|| | | || || || || |||||| || |||
Sbjct 803 CGCACTCTGTACGGCTTCGGCGGTTAATATTTTAA 837
>seq3865
Length=1214
Score = 118 bits (130), Expect = 2e-22
Identities = 190/272 (70%), Gaps = 1/272 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| | | | || || || |||||||| || ||||| ||||| || |||
Sbjct 942 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 1001
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || || | || || ||||| ||| | || || || | || || |||| |
Sbjct 1002 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 1061
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | |||||| ||| || |||| || || || || || |||
Sbjct 1062 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 1121
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG-CATTGAAACGTCAAGG 16671
||||| || | ||||| |||||| ||||||| |||| || | | ||||| || || ||
Sbjct 1122 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTTGAAGCGGCAGGG 1181
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
|| | | || || || || |||||| ||
Sbjct 1182 GCGCACTCTGTACGGCTTCGGCGGTTAATATT 1213
>seq2646
Length=114618
Score = 114 bits (126), Expect = 2e-21
Identities = 186/268 (69%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| | | | || || ||||||||||| || ||||| ||||| || |||
Sbjct 6252 GCGAAGCGTCACAGGAAAGTGCTGCGCGATAACATCCAGGGCATCACGAAGCCGGCCATC 6193
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || || | || | ||||| ||| | || || || | || || |||| |
Sbjct 6192 CGTCGTCTCGCCCGCAGGGGCGCCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 6133
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | |||||| ||| || |||| || || || || || |||
Sbjct 6132 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 6073
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| |||||| ||||||| | || || || |||| || || ||
Sbjct 6072 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTAGTGTACGCCCTGAAGCGGCAGGGG 6013
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
|| | | || || || || ||||||
Sbjct 6012 CGCACTCTGTACGGCTTCGGCGGTTAAT 5985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79071260251137
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