Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1366 125 1e-24 seq3931 122 1e-23 seq3928 122 1e-23 seq3890 122 1e-23 seq3094 122 1e-23 seq3068 122 1e-23 seq3039 122 1e-23 seq3865 118 2e-22 seq2646 114 2e-21 >seq1366 Length=601710 Score = 125 bits (138), Expect = 1e-24 Identities = 185/262 (71%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| || ||| | | | || | || ||||||||||| |||||||| |||||||| Sbjct 176976 CGCTAAACGCCATAGAAAAGTACTCAGGGACAACATCCAAGGCATCACCAAACCAGCTAT 176917 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | || | ||||| ||||| ||||| | || || || | || ||||| | Sbjct 176916 AAGAAGATTAGCAAGACGTGGCGGAGTTAAGCGCATTTCCGGTTTAATTTACGAAGAAAC 176857 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||||||||||| || || | | || ||| ||||| | ||||| || Sbjct 176856 CCGCGGAGTTTTGAAGATTTTTCTAGAAAATGTCATCAGAGATGCCGTAACTTATACTGA 176797 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| ||| |||||||| | || || ||||||||| | || || Sbjct 176796 ACACGCTAAAAGGAAGACTGTTACCGCCATGGATGTGGTTTACGCATTGAAAAGACAGGG 176737 Query 16672 CCGTAAGATTTATGGTTTTGGA 16693 ||| | | ||||| |||||| Sbjct 176736 CCGCACTTTGTATGGATTTGGA 176715 >seq3931 Length=1145 Score = 122 bits (134), Expect = 1e-23 Identities = 192/275 (70%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | || || || |||||||| || ||||| ||||| || ||| Sbjct 1066 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 1007 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || | || || ||||| ||| | || || || | || || |||| | Sbjct 1006 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 947 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | |||||| ||| || |||| || || || || || ||| Sbjct 946 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 887 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| |||| || || |||| || || || Sbjct 886 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGGCAGGGG 827 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707 || | | || || || || |||||| || ||| Sbjct 826 CGCACTCTGTACGGCTTCGGCGGTTAATATTTTAA 792 >seq3928 Length=1036 Score = 122 bits (134), Expect = 1e-23 Identities = 192/275 (70%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | || || || |||||||| || ||||| ||||| || ||| Sbjct 877 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 818 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || | || || ||||| ||| | || || || | || || |||| | Sbjct 817 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 758 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | |||||| ||| || |||| || || || || || ||| Sbjct 757 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 698 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| |||| || || |||| || || || Sbjct 697 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGGCAGGGG 638 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707 || | | || || || || |||||| || ||| Sbjct 637 CGCACTCTGTACGGCTTCGGCGGTTAATATTTTAA 603 >seq3890 Length=1225 Score = 122 bits (134), Expect = 1e-23 Identities = 192/275 (70%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | || || || |||||||| || ||||| ||||| || ||| Sbjct 250 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 309 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || | || || ||||| ||| | || || || | || || |||| | Sbjct 310 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 369 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | |||||| ||| || |||| || || || || || ||| Sbjct 370 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 429 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| |||| || || |||| || || || Sbjct 430 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGGCAGGGG 489 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707 || | | || || || || |||||| || ||| Sbjct 490 CGCACTCTGTACGGCTTCGGCGGTTAATATTTTAA 524 >seq3094 Length=1096 Score = 122 bits (134), Expect = 1e-23 Identities = 192/275 (70%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | || || || |||||||| || ||||| ||||| || ||| Sbjct 968 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 909 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || | || || ||||| ||| | || || || | || || |||| | Sbjct 908 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 849 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | |||||| ||| || |||| || || || || || ||| Sbjct 848 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 789 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| |||| || || |||| || || || Sbjct 788 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGGCAGGGG 729 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707 || | | || || || || |||||| || ||| Sbjct 728 CGCACTCTGTACGGCTTCGGCGGTTAATATTTTAA 694 >seq3068 Length=1291 Score = 122 bits (134), Expect = 1e-23 Identities = 192/275 (70%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | || || || |||||||| || ||||| ||||| || ||| Sbjct 759 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 700 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || | || || ||||| ||| | || || || | || || |||| | Sbjct 699 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 640 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | |||||| ||| || |||| || || || || || ||| Sbjct 639 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 580 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| |||| || || |||| || || || Sbjct 579 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGGCAGGGG 520 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707 || | | || || || || |||||| || ||| Sbjct 519 CGCACTCTGTACGGCTTCGGCGGTTAATATTTTAA 485 >seq3039 Length=1324 Score = 122 bits (134), Expect = 1e-23 Identities = 192/275 (70%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | || || || |||||||| || ||||| ||||| || ||| Sbjct 563 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 622 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || | || || ||||| ||| | || || || | || || |||| | Sbjct 623 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 682 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | |||||| ||| || |||| || || || || || ||| Sbjct 683 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 742 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| |||| || || |||| || || || Sbjct 743 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTGAAGCGGCAGGGG 802 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707 || | | || || || || |||||| || ||| Sbjct 803 CGCACTCTGTACGGCTTCGGCGGTTAATATTTTAA 837 >seq3865 Length=1214 Score = 118 bits (130), Expect = 2e-22 Identities = 190/272 (70%), Gaps = 1/272 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | || || || |||||||| || ||||| ||||| || ||| Sbjct 942 GCGAAGCGTCACAGGAAAGTGCTGCGCGACAACATCCAGGGCATCACGAAGCCGGCCATC 1001 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || | || || ||||| ||| | || || || | || || |||| | Sbjct 1002 CGTCGTCTCGCCCGCAGGGGCGGCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 1061 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | |||||| ||| || |||| || || || || || ||| Sbjct 1062 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 1121 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG-CATTGAAACGTCAAGG 16671 ||||| || | ||||| |||||| ||||||| |||| || | | ||||| || || || Sbjct 1122 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTCGTGTACGCCCTTGAAGCGGCAGGG 1181 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | || || || || |||||| || Sbjct 1182 GCGCACTCTGTACGGCTTCGGCGGTTAATATT 1213 >seq2646 Length=114618 Score = 114 bits (126), Expect = 2e-21 Identities = 186/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | || || ||||||||||| || ||||| ||||| || ||| Sbjct 6252 GCGAAGCGTCACAGGAAAGTGCTGCGCGATAACATCCAGGGCATCACGAAGCCGGCCATC 6193 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || | || | ||||| ||| | || || || | || || |||| | Sbjct 6192 CGTCGTCTCGCCCGCAGGGGCGCCGTCAAACGTATATCCGGCCTGATATACGAGGAGACT 6133 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | |||||| ||| || |||| || || || || || ||| Sbjct 6132 CGCGGAGTGCTGAAGGTGTTCCTCGAGAATGTGATCCGCGACGCCGTCACGTACACGGAG 6073 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| ||||||| | || || || |||| || || || Sbjct 6072 CACGCCAAGAGGAAGACCGTCACCGCCATGGACGTAGTGTACGCCCTGAAGCGGCAGGGG 6013 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || || || || |||||| Sbjct 6012 CGCACTCTGTACGGCTTCGGCGGTTAAT 5985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071260251137