Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq28 114 3e-21 seq3306 107 4e-19 seq2164 102 2e-17 seq1099 82.4 1e-11 >seq28 Length=11703 Score = 114 bits (126), Expect = 3e-21 Identities = 341/517 (66%), Gaps = 22/517 (4%) Strand=Plus/Plus Query 4474 AAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTA-GGTTT--- 4529 ||||| || |||||||| || |||| |||| | |||||| ||| || ||||| Sbjct 2536 AAAAAAAAATATGTTATACATTATAGAAATCTTTTGCAATGTG-AGAAATATGGTTTGCG 2594 Query 4530 AGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATA 4589 ||| | | ||| | || ||| || ||||| ||| | | ||| | ||| ||| Sbjct 2595 AGTAC---AAAAAGTTCATAGAGTATTAAAATTCAAGCCAAAACCTTGGTTAAAAAAATA 2651 Query 4590 TATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTA 4649 ||| || ||| || || |||| |||| | || || |||||| | ||||| Sbjct 2652 TATTGAATTAAACACTCAATTACGAACTTTAGCAACATCCGACTTTGAAAAAGATTTTTA 2711 Query 4650 TAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAA-AG 4708 ||| | ||||||||| | || ||||||||||| ||||| ||| | |||||| | | | Sbjct 2712 TAAGCTGATGAATAATTCTGTATTTGGAAAGACAATGGAAAATAT-CGAAAAAAGAGTAA 2770 Query 4709 ATATATATTTAAGAACAAAGTGGCAAAGTCAAT--ACAATGTATCGGATTTAGTATGTAG 4766 | | | ||| |||| | ||| ||| ||| | ||| | | || || | | Sbjct 2771 ACGTGAAATTATTAACACATTGGGAAAATCATGGAAAAATCAAAGGTGTTGAGAGTCT-- 2828 Query 4767 ACCAAACTTCCACAGCCTTACAATTTTTGATGAGGATATGGTTATAGTTGAACTTAAAAA 4826 || |||||||| ||| | |||||| ||| || |||| ||| ||||| || Sbjct 2829 --CA---TTCCACAGTCTTTCCATTTTTTCTGAAAATTTGGTCGCAGTCCAACTTCGCAA 2883 Query 4827 AGCTAGAGTTTGCTTCAACAAGCCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAA 4886 | ||| | | | | || ||||| || ||| |||| ||||| |||||||| |||| || Sbjct 2884 AACTAAATTGTTTTATAATAAGCCCATATATTTAGGTTTTAGCATATTAGAGATATCCAA 2943 Query 4887 AATTTATATTTATGACTTTCATTACAATTATGTTATGCAAAATTATGTAAATACCTCAAA 4946 | || || ||||||||||| || | || ||| ||||| | | | | | ||| Sbjct 2944 GACTTTAATGTATGACTTTCACTATCAGTA---CATGAAAAATAAATTTACCAACATAAA 3000 Query 4947 ATTATTGTACACTGACACAGATAGTCTAATTTACCAA 4983 ||| || || ||||| || |||||||| || |||||| Sbjct 3001 ATTGTTATATACTGATACTGATAGTCTGATATACCAA 3037 >seq3306 Length=32225 Score = 107 bits (118), Expect = 4e-19 Identities = 246/364 (68%), Gaps = 15/364 (4%) Strand=Plus/Plus Query 4630 GAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAG 4689 || || |||||| | |||||||| | ||||||||| | || ||||||||||| ||||| Sbjct 31358 GACTTTGAAAAAGATTTTTATAAGCTGATGAATAATTCTGTATTTGGAAAGACAATGGAA 31417 Query 4690 AATGTACGAAAATATAA-AGATATATATTTAAGAACAAAGTGGCAAAGTCA-------AT 4741 ||| | |||||| | | | | | | ||| |||| | ||| ||| ||| || Sbjct 31418 AATAT-CGAAAAAAGAGTAAACGTGAAATTATTAACACATTGGGAAAATCATGGAAAAAT 31476 Query 4742 ACAATGTATCG-GATTTAGTATGTA-GACCAAACTTCCACAGCCTTACAATTTTTGATGA 4799 || || | | || | ||| | || | |||||||| ||| | |||||| ||| Sbjct 31477 CAAAGGTGTTGAGAGTCTCATTGTTCGCCCGGAATTCCACAGTCTTTCCATTTTTTCTGA 31536 Query 4800 GGATATGGTTATAGTTGAACTTAAAAAAGCTAGAGTTTGCTTCAACAAGCCGATCTATGT 4859 || |||| ||| ||||| ||| ||| | | | | || ||||| || ||| | Sbjct 31537 AAATTTGGTCGCAGTCCAACTTCGCAAA-CTAAATTGTTTTATAATAAGCCCATATATTT 31595 Query 4860 AGGGTTTAGTATATTAGATTTATCTAAAATTTATATTTATGACTTTCATTACAATTATGT 4919 ||| ||||| |||||||| |||| || | || || ||||||||||| || | || Sbjct 31596 AGGTTTTAGCATATTAGAGATATCCAAGACTTTAATGTATGACTTTCACTATCAGTA--- 31652 Query 4920 TATGCAAAATTATGTAAATACCTCAAAATTATTGTACACTGACACAGATAGTCTAATTTA 4979 ||| ||||| | | | | | |||||| || || ||||| || |||||||| || || Sbjct 31653 CATGAAAAATAAATTTACCAACATAAAATTGTTATATACTGATACTGATAGTCTGATATA 31712 Query 4980 CCAA 4983 |||| Sbjct 31713 CCAA 31716 >seq2164 Length=148656 Score = 102 bits (112), Expect = 2e-17 Identities = 243/364 (67%), Gaps = 14/364 (4%) Strand=Plus/Plus Query 4630 GAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAG 4689 || || |||||| | |||||||| | ||||||||| | || ||||||||||| ||||| Sbjct 60 GACTTTGAAAAAGATTTTTATAAGCTGATGAATAATTCTGTATTTGGAAAGACAATGGAA 119 Query 4690 AATGTACGAAAATATAA-AGATATATATTTAAGAACAAAGTGGCAAAGTCAATACAATGT 4748 ||| | |||||| | | | | | | ||| |||| | ||| ||| ||| || | Sbjct 120 AATAT-CGAAAAAAGAGTAAACGTGAAATTATTAACACATTGGGAAAATCATGGAAAAAT 178 Query 4749 ATCGGATTT----AGTATG-----TAGACCAAACTTCCACAGCCTTACAATTTTTGATGA 4799 ||| | ||| | | | || | |||||||| ||| | |||||| ||| Sbjct 179 CAAAGATGTTGAGAGTCTCATTGCTCGCCCCGAATTCCACAGTCTTTCCATTTTTTCTGA 238 Query 4800 GGATATGGTTATAGTTGAACTTAAAAAAGCTAGAGTTTGCTTCAACAAGCCGATCTATGT 4859 || |||| ||| ||||| ||| ||| | | | | || ||||| || ||| | Sbjct 239 AAATTTGGTCGCAGTCCAACTTCGCAAAACTAAATTGTTTTATAATAAGCCCATATATTT 298 Query 4860 AGGGTTTAGTATATTAGATTTATCTAAAATTTATATTTATGACTTTCATTACAATTATGT 4919 ||| ||||| |||||||| |||| || | || || ||||||||||| || | || Sbjct 299 AGGTTTTAGCATATTAGAGATATCCAAGACTTTAATGTATGACTTTCACTATCAGTA--- 355 Query 4920 TATGCAAAATTATGTAAATACCTCAAAATTATTGTACACTGACACAGATAGTCTAATTTA 4979 ||| ||||| | | | | | ||||| || || ||||| || |||||||| || || Sbjct 356 CATGAAAAATAAATTTACCAACATAAAATCGTTATATACTGATACTGATAGTCTGATATA 415 Query 4980 CCAA 4983 |||| Sbjct 416 CCAA 419 >seq1099 Length=13384 Score = 82.4 bits (90), Expect = 1e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 4774 TTCCACAGCCTTACAATTTTTGA-TGAGGATATGGTTAT-AGTTGAACTTAAAAAAGCTA 4831 |||||||| ||| | |||||| ||| || ||||| ||| ||||| ||| ||| Sbjct 13368 TTCCACAGTCTTTCCATTTTTTTCTGAAAATTTGGTTCGCAGTCCAACTTCGCAAA-CTA 13310 Query 4832 GAGTTTGCTTCAACAAGCCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAAAATTT 4891 | | | | || ||||| || ||| |||| ||||| |||||||| |||| || | || Sbjct 13309 AATTGTTTTATAATAAGCCCATATATTTAGGTTTTAGCATATTAGAGATATCCAAGACTT 13250 Query 4892 ATATTTATGACTTTCATTACAATTATGTTATGCAAAATTATGTAAATACCTCAAAATTAT 4951 || ||||||||||| || | || ||| ||||| | | | | | |||||| | Sbjct 13249 TAATGTATGACTTTCACTATCAGTA---CATGAAAAATAAATTTACCAACATAAAATTGT 13193 Query 4952 TGTACACTGACACAGATAGTCTAATTTACCAA 4983 | || ||||| || |||||||| || |||||| Sbjct 13192 TATATACTGATACTGATAGTCTGATATACCAA 13161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97969386711186