Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq28 114 3e-21
seq3306 107 4e-19
seq2164 102 2e-17
seq1099 82.4 1e-11
>seq28
Length=11703
Score = 114 bits (126), Expect = 3e-21
Identities = 341/517 (66%), Gaps = 22/517 (4%)
Strand=Plus/Plus
Query 4474 AAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTA-GGTTT--- 4529
||||| || |||||||| || |||| |||| | |||||| ||| || |||||
Sbjct 2536 AAAAAAAAATATGTTATACATTATAGAAATCTTTTGCAATGTG-AGAAATATGGTTTGCG 2594
Query 4530 AGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATA 4589
||| | | ||| | || ||| || ||||| ||| | | ||| | ||| |||
Sbjct 2595 AGTAC---AAAAAGTTCATAGAGTATTAAAATTCAAGCCAAAACCTTGGTTAAAAAAATA 2651
Query 4590 TATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTA 4649
||| || ||| || || |||| |||| | || || |||||| | |||||
Sbjct 2652 TATTGAATTAAACACTCAATTACGAACTTTAGCAACATCCGACTTTGAAAAAGATTTTTA 2711
Query 4650 TAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAA-AG 4708
||| | ||||||||| | || ||||||||||| ||||| ||| | |||||| | | |
Sbjct 2712 TAAGCTGATGAATAATTCTGTATTTGGAAAGACAATGGAAAATAT-CGAAAAAAGAGTAA 2770
Query 4709 ATATATATTTAAGAACAAAGTGGCAAAGTCAAT--ACAATGTATCGGATTTAGTATGTAG 4766
| | | ||| |||| | ||| ||| ||| | ||| | | || || | |
Sbjct 2771 ACGTGAAATTATTAACACATTGGGAAAATCATGGAAAAATCAAAGGTGTTGAGAGTCT-- 2828
Query 4767 ACCAAACTTCCACAGCCTTACAATTTTTGATGAGGATATGGTTATAGTTGAACTTAAAAA 4826
|| |||||||| ||| | |||||| ||| || |||| ||| ||||| ||
Sbjct 2829 --CA---TTCCACAGTCTTTCCATTTTTTCTGAAAATTTGGTCGCAGTCCAACTTCGCAA 2883
Query 4827 AGCTAGAGTTTGCTTCAACAAGCCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAA 4886
| ||| | | | | || ||||| || ||| |||| ||||| |||||||| |||| ||
Sbjct 2884 AACTAAATTGTTTTATAATAAGCCCATATATTTAGGTTTTAGCATATTAGAGATATCCAA 2943
Query 4887 AATTTATATTTATGACTTTCATTACAATTATGTTATGCAAAATTATGTAAATACCTCAAA 4946
| || || ||||||||||| || | || ||| ||||| | | | | | |||
Sbjct 2944 GACTTTAATGTATGACTTTCACTATCAGTA---CATGAAAAATAAATTTACCAACATAAA 3000
Query 4947 ATTATTGTACACTGACACAGATAGTCTAATTTACCAA 4983
||| || || ||||| || |||||||| || ||||||
Sbjct 3001 ATTGTTATATACTGATACTGATAGTCTGATATACCAA 3037
>seq3306
Length=32225
Score = 107 bits (118), Expect = 4e-19
Identities = 246/364 (68%), Gaps = 15/364 (4%)
Strand=Plus/Plus
Query 4630 GAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAG 4689
|| || |||||| | |||||||| | ||||||||| | || ||||||||||| |||||
Sbjct 31358 GACTTTGAAAAAGATTTTTATAAGCTGATGAATAATTCTGTATTTGGAAAGACAATGGAA 31417
Query 4690 AATGTACGAAAATATAA-AGATATATATTTAAGAACAAAGTGGCAAAGTCA-------AT 4741
||| | |||||| | | | | | | ||| |||| | ||| ||| ||| ||
Sbjct 31418 AATAT-CGAAAAAAGAGTAAACGTGAAATTATTAACACATTGGGAAAATCATGGAAAAAT 31476
Query 4742 ACAATGTATCG-GATTTAGTATGTA-GACCAAACTTCCACAGCCTTACAATTTTTGATGA 4799
|| || | | || | ||| | || | |||||||| ||| | |||||| |||
Sbjct 31477 CAAAGGTGTTGAGAGTCTCATTGTTCGCCCGGAATTCCACAGTCTTTCCATTTTTTCTGA 31536
Query 4800 GGATATGGTTATAGTTGAACTTAAAAAAGCTAGAGTTTGCTTCAACAAGCCGATCTATGT 4859
|| |||| ||| ||||| ||| ||| | | | | || ||||| || ||| |
Sbjct 31537 AAATTTGGTCGCAGTCCAACTTCGCAAA-CTAAATTGTTTTATAATAAGCCCATATATTT 31595
Query 4860 AGGGTTTAGTATATTAGATTTATCTAAAATTTATATTTATGACTTTCATTACAATTATGT 4919
||| ||||| |||||||| |||| || | || || ||||||||||| || | ||
Sbjct 31596 AGGTTTTAGCATATTAGAGATATCCAAGACTTTAATGTATGACTTTCACTATCAGTA--- 31652
Query 4920 TATGCAAAATTATGTAAATACCTCAAAATTATTGTACACTGACACAGATAGTCTAATTTA 4979
||| ||||| | | | | | |||||| || || ||||| || |||||||| || ||
Sbjct 31653 CATGAAAAATAAATTTACCAACATAAAATTGTTATATACTGATACTGATAGTCTGATATA 31712
Query 4980 CCAA 4983
||||
Sbjct 31713 CCAA 31716
>seq2164
Length=148656
Score = 102 bits (112), Expect = 2e-17
Identities = 243/364 (67%), Gaps = 14/364 (4%)
Strand=Plus/Plus
Query 4630 GAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAG 4689
|| || |||||| | |||||||| | ||||||||| | || ||||||||||| |||||
Sbjct 60 GACTTTGAAAAAGATTTTTATAAGCTGATGAATAATTCTGTATTTGGAAAGACAATGGAA 119
Query 4690 AATGTACGAAAATATAA-AGATATATATTTAAGAACAAAGTGGCAAAGTCAATACAATGT 4748
||| | |||||| | | | | | | ||| |||| | ||| ||| ||| || |
Sbjct 120 AATAT-CGAAAAAAGAGTAAACGTGAAATTATTAACACATTGGGAAAATCATGGAAAAAT 178
Query 4749 ATCGGATTT----AGTATG-----TAGACCAAACTTCCACAGCCTTACAATTTTTGATGA 4799
||| | ||| | | | || | |||||||| ||| | |||||| |||
Sbjct 179 CAAAGATGTTGAGAGTCTCATTGCTCGCCCCGAATTCCACAGTCTTTCCATTTTTTCTGA 238
Query 4800 GGATATGGTTATAGTTGAACTTAAAAAAGCTAGAGTTTGCTTCAACAAGCCGATCTATGT 4859
|| |||| ||| ||||| ||| ||| | | | | || ||||| || ||| |
Sbjct 239 AAATTTGGTCGCAGTCCAACTTCGCAAAACTAAATTGTTTTATAATAAGCCCATATATTT 298
Query 4860 AGGGTTTAGTATATTAGATTTATCTAAAATTTATATTTATGACTTTCATTACAATTATGT 4919
||| ||||| |||||||| |||| || | || || ||||||||||| || | ||
Sbjct 299 AGGTTTTAGCATATTAGAGATATCCAAGACTTTAATGTATGACTTTCACTATCAGTA--- 355
Query 4920 TATGCAAAATTATGTAAATACCTCAAAATTATTGTACACTGACACAGATAGTCTAATTTA 4979
||| ||||| | | | | | ||||| || || ||||| || |||||||| || ||
Sbjct 356 CATGAAAAATAAATTTACCAACATAAAATCGTTATATACTGATACTGATAGTCTGATATA 415
Query 4980 CCAA 4983
||||
Sbjct 416 CCAA 419
>seq1099
Length=13384
Score = 82.4 bits (90), Expect = 1e-11
Identities = 148/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 4774 TTCCACAGCCTTACAATTTTTGA-TGAGGATATGGTTAT-AGTTGAACTTAAAAAAGCTA 4831
|||||||| ||| | |||||| ||| || ||||| ||| ||||| ||| |||
Sbjct 13368 TTCCACAGTCTTTCCATTTTTTTCTGAAAATTTGGTTCGCAGTCCAACTTCGCAAA-CTA 13310
Query 4832 GAGTTTGCTTCAACAAGCCGATCTATGTAGGGTTTAGTATATTAGATTTATCTAAAATTT 4891
| | | | || ||||| || ||| |||| ||||| |||||||| |||| || | ||
Sbjct 13309 AATTGTTTTATAATAAGCCCATATATTTAGGTTTTAGCATATTAGAGATATCCAAGACTT 13250
Query 4892 ATATTTATGACTTTCATTACAATTATGTTATGCAAAATTATGTAAATACCTCAAAATTAT 4951
|| ||||||||||| || | || ||| ||||| | | | | | |||||| |
Sbjct 13249 TAATGTATGACTTTCACTATCAGTA---CATGAAAAATAAATTTACCAACATAAAATTGT 13193
Query 4952 TGTACACTGACACAGATAGTCTAATTTACCAA 4983
| || ||||| || |||||||| || ||||||
Sbjct 13192 TATATACTGATACTGATAGTCTGATATACCAA 13161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97969386711186
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |