Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1351 111 2e-19 >seq1351 Length=825266 Score = 111 bits (122), Expect = 2e-19 Identities = 160/219 (73%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 21477 ATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAAC 21536 || |||||| || | || |||| |||||||| || | ||||||| || || || | Sbjct 601374 ATACAAAATTACGAAACATACCT-CATCCCTAGAAATAAGTTCATTACTGAAAGTCAATC 601432 Query 21537 CGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAA 21595 ||||||| | |||| ||||| |||||||||||||| ||||| ||| ||||| || || Sbjct 601433 CGGGCATCAGACCTCGTTTTTTCAACCAAAATATTGAAGCAAA-GCTGCCTGAGAAAAAT 601491 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGAT-TCTTTATCCAA 21654 || |||||||| || ||||| |||| || ||||| || |||||| | |||| | | Sbjct 601492 ATTCCCTCAACTGCTGCAAAAGCAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGC-C 601550 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACA 21693 ||||| | | ||||| | |||||| | |||| ||| Sbjct 601551 GATCCACTGTAACGCCCAGTCTGCCTTCTTCTTAACACA 601589 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 21125 ATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATT 21184 |||||||| ||||||||||| | ||||||||| || || | ||| | |||| Sbjct 599399 ATTTAAAATTCAGCATCTAAAGTGAAAACATTGTCCATAGGTTGCGCCATCACTCCCCAC 599458 Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT-AGA 21243 || || || || | |||| | || || || |||||||| || ||||||||||| || ||| Sbjct 599459 TTCTGGTATTCTCCAACTTTCTTCTCAAAGAAATTTGTTTTGCCTTCCAATGAGATGAGA 599518 Query 21244 TTCCATAAAATCAAATGGATT 21264 || ||||||||| |||||||| Sbjct 599519 TT-CATAAAATCGAATGGATT 599538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531872150493160