Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3463 183 3e-41 seq3345 163 3e-35 seq2787 125 7e-24 seq1305 116 3e-21 seq3388 86.0 6e-12 seq2396 84.2 2e-11 >seq3463 Length=282612 Score = 183 bits (202), Expect = 3e-41 Identities = 336/492 (68%), Gaps = 8/492 (2%) Strand=Plus/Minus Query 23643 GCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTCCCGTAGACAAAGTGCCCGTG 23702 |||||||| || || ||||| || ||||| || |||| ||||| || | || | Sbjct 183009 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATA 182950 Query 23703 CCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGGGAATTAAC 23762 |||||| | | ||||||||||||||||| | || || |||||||| || || || || Sbjct 182949 CCTAATCTTACTCATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGTGACGGCATCAAT 182890 Query 23763 GACGCTCTCAAAACCGTGCCGGGCAGTTTCGAGGCGCTGCAGCGTTCGTGCGCGGGCCGC 23822 || | | ||| | ||||||||| | || || ||||| || || ||||| Sbjct 182889 GATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGT 182830 Query 23823 GCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAAGCCGCAGAAGGGA 23882 | |||||||| || || ||||||||||| |||||||| | || || || || || ||| Sbjct 182829 GAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGA 182770 Query 23883 GTGTCGGCGTGGAACGAGCCGTATCGTGGAAACTTTGGTCAGTTGATGGCAACGAAACTG 23942 |||| | ||||||||||| || || |||||||| || || ||| || |||| Sbjct 182769 TTGTCTTCATGGAACGAGCCTTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAA 182710 Query 23943 GCGTATCCGCACTTGAAAGTGCTACCTTCGATCGGTGGCTGGACGCTGTCTGATCCGTT- 24001 || || | ||||| | || || || || ||||| |||||||| | ||||| || Sbjct 182709 GCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTTC 182650 Query 24002 ---TTATCACATGCACGAGCCCAGCGTACGCCGTGTGTTTATCGACTCTGTCGAAGAGTT 24058 || | | || | | || | || | ||| | | || || | ||||| Sbjct 182649 TTCTTTTTAGTTGACAAATCTAAGAGAACAC----GATTTGTGCAGTCAGTAAAGGAGTT 182594 Query 24059 TTTGTTAACGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTCCCCGGCGGCAA 24118 | | |||| ||||||||||| || || || || || |||||||||||||| || ||||| Sbjct 182593 TCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAA 182534 Query 24119 AGGGGCAAATCC 24130 ||| || || || Sbjct 182533 AGGTGCTAACCC 182522 >seq3345 Length=207354 Score = 163 bits (180), Expect = 3e-35 Identities = 448/685 (65%), Gaps = 10/685 (1%) Strand=Plus/Minus Query 145103 TTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTG 145162 || || || |||||||||||||| || | ||||| || ||||| || || | || || Sbjct 112993 TTTGATGTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTC 112934 Query 145163 GGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGC 145222 ||||| || | ||||| |||||||||| || || || || | ||| || || Sbjct 112933 GGCATTGGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGG 112874 Query 145223 GTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCC 145282 | | |||| ||||| || || || | ||||||||| || ||||| | || || Sbjct 112873 GCAGCCCAGTCCCAAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCT 112814 Query 145283 TCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTT--GGCGAGCTCGC 145340 | ||| || || || |||||| | | ||||| ||| || |||| || | || | Sbjct 112813 TGGCTTGCTGGACTCCCTTGATATGTGCTGTA--TGCACCTTCTTTTTCAGCTAATTCAC 112756 Query 145341 AACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCG 145400 |||| || || | || || |||||||||| || ||||| ||||| || || | Sbjct 112755 AACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTG 112696 Query 145401 CTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTC 145460 ||| || || ||||| | || | || || ||||| ||||| || | ||||| | | Sbjct 112695 CTTTCTCACTTTCGTAAGAAATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACAC 112636 Query 145461 CCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGAT 145520 | | || || || | |||| |||| || | | || || |||||| || Sbjct 112635 CAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAAT 112576 Query 145521 TACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTT 145580 || || |||| ||| || || ||| | ||| | |||||| || | || |||| Sbjct 112575 TAACATCAATAACTTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTT 112516 Query 145581 CAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAAT 145640 ||| | ||| | | | ||||| | || | || | || || || || | | Sbjct 112515 TAAAATTAAATCTATTATTTTCAACAAACA------TGTTAAGTGCTATGGAAGCAAGGT 112462 Query 145641 TACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700 | || |||||| || || | ||||||| || | ||| | ||| | |||||||| Sbjct 112461 TGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTAC 112402 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 |||| || || || ||||||| |||||||| || ||||| || || ||||| || | || Sbjct 112401 ATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACA 112342 Query 145761 TGTACGGTCCGCCAGTCTCCACCTG 145785 |||| ||| |||||||| || || Sbjct 112341 TGTATGGTGTACCAGTCTCTACTTG 112317 >seq2787 Length=76071 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| |||| ||| | ||| |||||||| || |||||||| || | Sbjct 40417 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 40358 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | ||||| || || |||| | ||||||||| || || ||| Sbjct 40357 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 40298 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| |||||| || | | || | |||||| | || || | Sbjct 40297 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 40238 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || ||||| ||||| || ||||||||||| Sbjct 40237 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| |||||||| | ||| ||||| ||||| |||||||| || | Sbjct 40645 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 40586 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || |||||||||||||| || |||| | ||| || || || || || Sbjct 40585 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGA 40526 Query 131128 ATTCCTTCTTTGTC 131141 || || ||||| || Sbjct 40525 ATACCCTCTTTATC 40512 >seq1305 Length=286731 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || ||||| | ||| | || || ||||||||||||||||| || | Sbjct 24758 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 24817 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || ||||| || || || || |||| ||||| |||||||| || || Sbjct 24818 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGA 24877 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || |||||| || | | || | |||||||| || ||| | Sbjct 24878 ATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTCCACC 24937 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||||||||| || || || || |||||||| ||||| Sbjct 24938 TCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 24984 >seq3388 Length=400618 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 131112 CTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGT 131171 ||||||||| || || ||||| |||||||| ||| || ||| | | ||| | ||| Sbjct 243071 CTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGT 243012 Query 131172 ATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTG 131231 || | || ||||| || | ||| | ||| ||||| ||||| ||||| ||||||||||| Sbjct 243011 GTCCGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAATCTG 242952 Query 131232 CATGA 131236 ||||| Sbjct 242951 CATGA 242947 >seq2396 Length=191974 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/123 (76%), Gaps = 6/123 (5%) Strand=Plus/Plus Query 113786 GGCTTTTACTATTTGAATCGTGGCGATGAAGTGCGCTGCGCTTTCTGCAAAGTCGAGATA 113845 ||||| || ||| || || ||||||||||| |||||||| || || ||||| || || Sbjct 136268 GGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATT 136327 Query 113846 ATGAGATGGAGACCCGGCGACGATCCTCTCGCC---GACCACAAACGTTGGGCGCCTCAC 113902 |||| |||| | ||||||||||| |||| |||||| | || ||||||||||| Sbjct 136328 ATGAAATGGGTTGCGGGCGACGATCC---CGCCAAGGACCACCAGCGCTGGGCGCCTCAG 136384 Query 113903 TGC 113905 ||| Sbjct 136385 TGC 136387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471987376210560