Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq3463 183 3e-41
seq3345 163 3e-35
seq2787 125 7e-24
seq1305 116 3e-21
seq3388 86.0 6e-12
seq2396 84.2 2e-11
>seq3463
Length=282612
Score = 183 bits (202), Expect = 3e-41
Identities = 336/492 (68%), Gaps = 8/492 (2%)
Strand=Plus/Minus
Query 23643 GCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTCCCGTAGACAAAGTGCCCGTG 23702
|||||||| || || ||||| || ||||| || |||| ||||| || | || |
Sbjct 183009 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATA 182950
Query 23703 CCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGGGAATTAAC 23762
|||||| | | ||||||||||||||||| | || || |||||||| || || || ||
Sbjct 182949 CCTAATCTTACTCATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGTGACGGCATCAAT 182890
Query 23763 GACGCTCTCAAAACCGTGCCGGGCAGTTTCGAGGCGCTGCAGCGTTCGTGCGCGGGCCGC 23822
|| | | ||| | ||||||||| | || || ||||| || || |||||
Sbjct 182889 GATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGT 182830
Query 23823 GCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAAGCCGCAGAAGGGA 23882
| |||||||| || || ||||||||||| |||||||| | || || || || || |||
Sbjct 182829 GAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGA 182770
Query 23883 GTGTCGGCGTGGAACGAGCCGTATCGTGGAAACTTTGGTCAGTTGATGGCAACGAAACTG 23942
|||| | ||||||||||| || || |||||||| || || ||| || ||||
Sbjct 182769 TTGTCTTCATGGAACGAGCCTTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAA 182710
Query 23943 GCGTATCCGCACTTGAAAGTGCTACCTTCGATCGGTGGCTGGACGCTGTCTGATCCGTT- 24001
|| || | ||||| | || || || || ||||| |||||||| | ||||| ||
Sbjct 182709 GCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTTC 182650
Query 24002 ---TTATCACATGCACGAGCCCAGCGTACGCCGTGTGTTTATCGACTCTGTCGAAGAGTT 24058
|| | | || | | || | || | ||| | | || || | |||||
Sbjct 182649 TTCTTTTTAGTTGACAAATCTAAGAGAACAC----GATTTGTGCAGTCAGTAAAGGAGTT 182594
Query 24059 TTTGTTAACGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTCCCCGGCGGCAA 24118
| | |||| ||||||||||| || || || || || |||||||||||||| || |||||
Sbjct 182593 TCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAA 182534
Query 24119 AGGGGCAAATCC 24130
||| || || ||
Sbjct 182533 AGGTGCTAACCC 182522
>seq3345
Length=207354
Score = 163 bits (180), Expect = 3e-35
Identities = 448/685 (65%), Gaps = 10/685 (1%)
Strand=Plus/Minus
Query 145103 TTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTG 145162
|| || || |||||||||||||| || | ||||| || ||||| || || | || ||
Sbjct 112993 TTTGATGTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTC 112934
Query 145163 GGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGC 145222
||||| || | ||||| |||||||||| || || || || | ||| || ||
Sbjct 112933 GGCATTGGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGG 112874
Query 145223 GTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCC 145282
| | |||| ||||| || || || | ||||||||| || ||||| | || ||
Sbjct 112873 GCAGCCCAGTCCCAAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCT 112814
Query 145283 TCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTT--GGCGAGCTCGC 145340
| ||| || || || |||||| | | ||||| ||| || |||| || | || |
Sbjct 112813 TGGCTTGCTGGACTCCCTTGATATGTGCTGTA--TGCACCTTCTTTTTCAGCTAATTCAC 112756
Query 145341 AACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCG 145400
|||| || || | || || |||||||||| || ||||| ||||| || || |
Sbjct 112755 AACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTG 112696
Query 145401 CTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTC 145460
||| || || ||||| | || | || || ||||| ||||| || | ||||| | |
Sbjct 112695 CTTTCTCACTTTCGTAAGAAATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACAC 112636
Query 145461 CCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGAT 145520
| | || || || | |||| |||| || | | || || |||||| ||
Sbjct 112635 CAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAAT 112576
Query 145521 TACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTT 145580
|| || |||| ||| || || ||| | ||| | |||||| || | || ||||
Sbjct 112575 TAACATCAATAACTTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTT 112516
Query 145581 CAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAAT 145640
||| | ||| | | | ||||| | || | || | || || || || | |
Sbjct 112515 TAAAATTAAATCTATTATTTTCAACAAACA------TGTTAAGTGCTATGGAAGCAAGGT 112462
Query 145641 TACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTAC 145700
| || |||||| || || | ||||||| || | ||| | ||| | ||||||||
Sbjct 112461 TGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTAC 112402
Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760
|||| || || || ||||||| |||||||| || ||||| || || ||||| || | ||
Sbjct 112401 ATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACA 112342
Query 145761 TGTACGGTCCGCCAGTCTCCACCTG 145785
|||| ||| |||||||| || ||
Sbjct 112341 TGTATGGTGTACCAGTCTCTACTTG 112317
>seq2787
Length=76071
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| |||||| |||| ||| | ||| |||||||| || |||||||| || |
Sbjct 40417 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 40358
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| || || | ||||| || || |||| | ||||||||| || || |||
Sbjct 40357 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 40298
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || |||||||| |||||| || | | || | |||||| | || || |
Sbjct 40297 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 40238
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||||| ||| || || ||||| ||||| || |||||||||||
Sbjct 40237 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| |||||| |||||||| | ||| ||||| ||||| |||||||| || |
Sbjct 40645 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 40586
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| || |||||||||||||| || |||| | ||| || || || || ||
Sbjct 40585 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGA 40526
Query 131128 ATTCCTTCTTTGTC 131141
|| || ||||| ||
Sbjct 40525 ATACCCTCTTTATC 40512
>seq1305
Length=286731
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||| | || ||||| | ||| | || || ||||||||||||||||| || |
Sbjct 24758 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 24817
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || || ||||| || || || || |||| ||||| |||||||| || ||
Sbjct 24818 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGA 24877
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| || || |||||| || | | || | |||||||| || ||| |
Sbjct 24878 ATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTCCACC 24937
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||||| ||||||||| || || || || |||||||| |||||
Sbjct 24938 TCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 24984
>seq3388
Length=400618
Score = 86.0 bits (94), Expect = 6e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 131112 CTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGT 131171
||||||||| || || ||||| |||||||| ||| || ||| | | ||| | |||
Sbjct 243071 CTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGT 243012
Query 131172 ATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTG 131231
|| | || ||||| || | ||| | ||| ||||| ||||| ||||| |||||||||||
Sbjct 243011 GTCCGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAATCTG 242952
Query 131232 CATGA 131236
|||||
Sbjct 242951 CATGA 242947
>seq2396
Length=191974
Score = 84.2 bits (92), Expect = 2e-11
Identities = 93/123 (76%), Gaps = 6/123 (5%)
Strand=Plus/Plus
Query 113786 GGCTTTTACTATTTGAATCGTGGCGATGAAGTGCGCTGCGCTTTCTGCAAAGTCGAGATA 113845
||||| || ||| || || ||||||||||| |||||||| || || ||||| || ||
Sbjct 136268 GGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATT 136327
Query 113846 ATGAGATGGAGACCCGGCGACGATCCTCTCGCC---GACCACAAACGTTGGGCGCCTCAC 113902
|||| |||| | ||||||||||| |||| |||||| | || |||||||||||
Sbjct 136328 ATGAAATGGGTTGCGGGCGACGATCC---CGCCAAGGACCACCAGCGCTGGGCGCCTCAG 136384
Query 113903 TGC 113905
|||
Sbjct 136385 TGC 136387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471987376210560
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