Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3463 179 3e-40 seq2787 120 2e-22 seq325 87.8 1e-12 >seq3463 Length=282612 Score = 179 bits (198), Expect = 3e-40 Identities = 768/1196 (64%), Gaps = 37/1196 (3%) Strand=Plus/Plus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 || ||||||||||| || || || || || |||||||| | |||||| ||||| | ||| Sbjct 181832 ATGTTCATGGCATTCAGTAGGTCACCGTTATCAGCGTCCACTTCCCAAGCAAAGAGACCA 181891 Query 95889 CCTAACTTGTTTTGTTCCACATATCGACCTTTAGCTATAACAGAATCAACACTATCATAT 95948 |||| |||||| | | |||||| ||| || | ||||| || | || ||||||| Sbjct 181892 CCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACCGATCTAGCATTATCATAG 181951 Query 95949 GAAATTAAATCGCCT-TTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCA-A 96006 | | | ||| || ||| | | | || | |||| | ||||| || || ||||| | Sbjct 181952 GTTACAAGATCTCCAGTTGATGGTCTGAAGA-CGTAAGGGGCTTGGGCGACATTGTCGTA 182010 Query 96007 ATTTAACAATATATTTGTTT-----ATTTCGTTTTTGATTTGGCGATAATCAACAACGCC 96061 || ||| || || ||||| || || | | ||| ||||| || || Sbjct 182011 ATGGAACTCCCACTTGCCTTGAGCGATTTCATTCGCAATCTCCCTATAGTCAACCACTCC 182070 Query 96062 ATCTTCCCAAGTGCCCGAAACGGGCCCGTTACTACTTCCCAAAAAATAGTTATCGTTTTC 96121 |||| |||||| || || || || || | || || | | || || Sbjct 182071 GTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAATGTTGTCTTT 182130 Query 96122 GTAATT-TGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGC 96180 ||||| ||| || |||||||| || ||||| ||||| || || || || | ||| || Sbjct 182131 GTAATCATGA-ACGCCAGTCCAACCACGACCATACATAGCAACACCTACTACAATCTTCT 182189 Query 96181 GCGGGTCCACGCCTTGATTTGTGAGCAA---TTTAACGGCATGGTCCGTGTTGTACAGCT 96237 || | ||| || || | ||||| ||| || | ||| | |||| | Sbjct 182190 TAGGATTCACTCCCTGC---GCCAGCAAGTATTTTACTCCGAAGTCAGATGTGTAAGTTT 182246 Query 96238 CGTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAA---TCAATGTTTG 96294 | || || ||||| |||||||||| || ||||| | ||| | | ||| |||| Sbjct 182247 CCTTGGGATTCCACGCTGGCGCGTACAATGGCGTTTGATGTCCAAGAGTGTCA---TTTG 182303 Query 96295 ACCACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAA 96354 |||| || || || || ||||| ||||| | || || | || | | ||||| || Sbjct 182304 ACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCT 182363 Query 96355 CGTCGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGT 96414 | | || | ||| || ||||| || || || || || ||| || || |||| Sbjct 182364 TGCCATAGTCTACAACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGTTAATTCGT 182423 Query 96415 ACGTTTTGCCCGTTTGCAGTTGCAA-CTCGTCTAACATCACGCGCAATTCCTTTAATAGA 96473 | | || || | | || || | |||||| | |||| | || ||||| || | | | Sbjct 182424 ATTTCTTACCATTCTT-AGCTGAGAGCTCGTCGAGCATCTCACGTAATTCTTTCATCAAA 182482 Query 96474 ATGTTGTACGTGTCAGCGTCGCGCTCTTTGTTGCCGAGCGTC-GGGTTGGCGCCTTTACC 96532 | || ||| | || ||| | | ||||| ||| ||||| || ||||| || Sbjct 182483 CTTACATAACAATCACCATCT---TCTGGGCTACCGAG-GTCAGGGTTAGCACCTTTGCC 182538 Query 96533 GCCCGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTC 96592 || || || ||||| ||||| || || || ||||| |||||||| | | ||| || Sbjct 182539 ACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAGAAACTC 182598 Query 96593 TCTGACGGAGTCTACAAACACGCGCCGTTTTTCCGCGTCGTGCATGTAATA----GAACG 96648 | || || | ||||| || | | | | | || || ||| | ||| | Sbjct 182599 CTTTACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGT-CAACTAAAAAGAAGAAAG 182654 Query 96649 GGTCGGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTT 96708 | |||| || ||||| || || ||||| || ||||| || | | || || ||| Sbjct 182655 GATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGTT 182714 Query 96709 TGGCCGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCT 96768 | | ||| || || ||||||||||||||||| ||||||||||| | ||||| || | Sbjct 182715 TTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAAGGCTCGTTCCATGAAGACAATCCTT 182774 Query 96769 TTTGCGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGC 96828 |||| |||||||||| ||| ||||| || ||||| || | ||||| || || ||||| Sbjct 182775 TTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGC 182834 Query 96829 CCTGGCAAGAGCGTTGCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGGCATCGTTAA 96888 | || || || || || |||| ||||| || || ||| | ||| || | Sbjct 182835 CGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAACTATCATTGA 182894 Query 96889 GGCCGTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCG 96948 |||||| ||||| ||||| || ||||| ||||| | |||||| | | || || | | Sbjct 182895 TGCCGTCACCGCCGCAAATTGGGATAAAGCCGTAGAGCAAATGAGTAAGATTAGGTATAG 182954 Query 96949 GCACTTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGCA 97004 | | ||||| || || || | | ||| || |||||||| || || || ||| Sbjct 182955 GTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTAGGCA 183010 >seq2787 Length=76071 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | |||||| | ||| || || |||||||| || ||||||||||| | | Sbjct 40417 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 40358 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||||||| || || ||| | ||||| ||||| || || || Sbjct 40357 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 40298 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || || ||| || || | | | ||| || ||| ||| Sbjct 40297 ATGCCCTCTTTGTCTTGGATTTTAGCT--TTTACATTTTCAATAGTATCAGAGGGTTCCA 40240 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||| ||||| ||||| || || ||||| |||||||||||||| Sbjct 40239 CTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || ||| | ||| || || || |||||||| || || || || | Sbjct 39961 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 39902 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | |||||| || ||| ||||||||| |||||| || || Sbjct 39901 AATGTACGGCCATCTTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGA 39842 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || ||||| |||||| | | | ||||||| ||||| Sbjct 39841 ATACCCTCTTTGTCTTGGATCTTTGC--CTTCACATTTTCGATAGTGTCGGACGGCTCTA 39784 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||||||||||| || || || || ||||| ||||||||| Sbjct 39783 CCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 39734 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | ||||| | ||||| || || || ||||| ||||| ||||| | Sbjct 41558 CCCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGA 41499 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | ||||| || ||||| || ||| | || || ||||||||||| || Sbjct 41498 CAGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGG 41439 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| || || || || || ||| || | | | ||||||| |||||| Sbjct 41438 AATGCCCTCCTTATCTTGGATCTTAGC--CTTAACATTTTCGATAGTGTCGGATGGCTCC 41381 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || || || || || ||||| |||||||| Sbjct 41380 ACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 41331 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||||||| || || || ||||| || || || |||||||| | | Sbjct 41101 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 41042 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| |||||| || || | ||||| || ||||| || ||| Sbjct 41041 AGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 40982 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || ||| | ||| || || | | | ||||| ||||| Sbjct 40981 ATTCCTTCCTTATCTTGAATCTTAGCT--TTAACATTTTCAATGGTGTCTGATGGCTCAA 40924 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || |||||||| || || ||||||||||| || |||||| Sbjct 40923 CTTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCATT 40874 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | |||| || || || ||||| ||||||||||| | || || | || Sbjct 40174 AGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCT 40115 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || ||||| ||||||||| ||||||| || ||||| ||| ||| | ||| |||||||| Sbjct 40114 TCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCT 40055 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | ||||| | || ||| | || || | Sbjct 40054 TGGATTTTAGCT--TTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTG 39997 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| || || ||||| ||||| || ||||| Sbjct 39996 TTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 39963 >seq325 Length=86326 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29344 GGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGG 29403 |||||||| ||||||||||| |||| | |||||| | || |||| ||||||||| Sbjct 15391 GGCGGCGTAGGGCTGAATCTGTGCGGCGCTAGCCACCTGCTGCTGCTGGACCCGCACTGG 15332 Query 29404 AACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAG 29454 ||||||||| ||||| |||||| |||| |||| | |||| |||| ||| Sbjct 15331 AACCCGCAGCTGGAGGAGCAGGCACAGGACCGCGTGTACCGCGTGGGGCAG 15281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405066726423910