Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2265 187 2e-42 seq2787 145 5e-30 seq3933 140 2e-28 seq3932 140 2e-28 seq3927 140 2e-28 seq3917 140 2e-28 seq3914 140 2e-28 seq3913 140 2e-28 seq3888 140 2e-28 seq3886 140 2e-28 seq3879 140 2e-28 seq3877 140 2e-28 seq3854 140 2e-28 seq3826 140 2e-28 seq3813 140 2e-28 seq3102 140 2e-28 seq3079 140 2e-28 seq3064 140 2e-28 seq3015 140 2e-28 seq3026 132 3e-26 seq3424 127 1e-24 seq1305 87.8 1e-12 >seq2265 Length=480565 Score = 187 bits (206), Expect = 2e-42 Identities = 127/143 (89%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||||| || ||||||| || | ||||||||||||||||||||||||||||| |||||| Sbjct 393022 ATGGGGTCCGTGAACGTGAACAGGAATGTGGCGGACGCGTTCTACCGCTACAAGATGCCG 393081 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||| Sbjct 393082 CGCATCTGCGCCAAGGTCGAGGGTAAGGGGAACGGCATCAAGACCGTCATCGTCAACATG 393141 Query 6282 CCTGAAGTCGCTAAGGCGCTCGG 6304 | || |||||||||||||| || Sbjct 393142 CTAGAGGTCGCTAAGGCGCTTGG 393164 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 ||||||||||| || || || |||| || ||||| || || ||||| ||||| || ||| Sbjct 396222 TTTATTCGCAAATTCGTCCTCTGTCCCGAGTGCGACAATCCCGAGACGGAGCTGATAGTG 396281 Query 6498 TCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTG 6557 || |||||||| ||||||||||| || |||||||| |||||||| ||||| ||| || Sbjct 396282 TCCACCAAGAGGAACACCATCTCGCAAGGCTGCAAGGCGTGCGGGTACCACGGCCCCTTG 396341 Query 6558 GATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || || ||||| || ||||||||||||||||| || || Sbjct 396342 GAATTCAACCATAAACTGAATACCTTCATACTGAAGAACCCGCC 396385 Score = 107 bits (118), Expect = 1e-18 Identities = 381/585 (65%), Gaps = 43/585 (7%) Strand=Plus/Plus Query 6811 ACCTGACTGAGAGTACCAAGTCTATGACGTTGAACGAAGACATGGaaaaaaaCCAAAAGC 6870 ||||||| ||| | ||||| |||||| || ||| |||| || || ||| | |||| Sbjct 400356 ACCTGACGGAGGGCGCCAAGAGCATGACGCTGTCCGAGGACAGCGAGAAGAACGAGAAGC 400415 Query 6871 AACGTTTGGACCTGTTCTATGTGTACCTCAAGCAGAAGCACACCTCCGGCGATGTCTCGG 6930 | || ||||| ||||||| || ||| |||||| || || | || | | ||| Sbjct 400416 AGCGCATGGACATGTTCTACTCGTTCCTGAAGCAGC-GCGCA-----GACGCGGGCGCGG 400469 Query 6931 AACACAAAGTCGCTGCGGATCTGTTACACGAGGCTGAACGGTTAAAAGTGAAATCAAAGG 6990 ||| |||||| || || | |||||||| || | | ||| | || | Sbjct 400470 T-CAC-----CGCTGCCGACGTGCTGAACGAGGCTACGCGCCTCGACGTGCGCGCCAACG 400523 Query 6991 CGCCGCTGGTGCTTTTTGAGGTGCTGGT-GCGTCCGGCCGCGCTGGCGTGCGATGTGCGC 7049 |||| || || || |||||||| || ||| ||| | |||| || ||| |||||| Sbjct 400524 CGCCTCTCGTCGCCTTCGAGGTGCTAGTCGCG-CCGCGCACGCTCGCCGCCGACGTGCGC 400582 Query 7050 AAGTACCGCGCGCTGTTGCTGCGCTTTACGCAACATGACCCGCGCGCGCAACGCGCCGTT 7109 ||||||| | || ||| | | | || ||||| || | ||||||| Sbjct 400583 CGCCACCGCGCCACCCTCCTCCGCCTCGCCCGCGCCGATCCGCGTGCACCCCGCGCCGCC 400642 Query 7110 CTCACTGCGCTTTGTGTGCTCGACACTGCG---------CTGCTGCCCAAAGTGGCCGGC 7160 || |||||| || ||||| | | || ||||| ||||| || ||| | Sbjct 400643 CTTCATGCGCTCACTGCGCTCGCCGCCGCCGAACCCGCTCTGCTCCCCAAGCTGCCCGCC 400702 Query 7161 GCGCTTAAACTGCTGTACGACCTAGACATAGTACAAGAGAAAACGATCATGGAGTGGTTC 7220 || || || ||||| |||||||| ||||| || | ||| | || |||| ||| | Sbjct 400703 GCCCTCAAGCTGCTCTACGACCTGGACATCGTGGACGAGCGCGCCGTCTTGGATTGGGCC 400762 Query 7221 CACAAGCCGTCGTGCAAG-ACTCTCAGCAAAGAAGTGATGGCTGACGTGCACCGCCGCGC 7279 |||||| || ||||| || | | ||| || ||| |||| ||||||| || || || Sbjct 400763 GCCAAGCCCTCACGCAAGTACGCGCC-CAAGGAGGTGGTGGCCGACGTGCTGCGGCGTGC 400821 Query 7280 GCAGCCCTTCCTGAACTGGCTGCAGCAAGC---CGAGGATGAT-------AGCA--GCGA 7327 |||||||||||| | ||||||||||| || |||||| || || | |||| Sbjct 400822 GCAGCCCTTCCTAGAGTGGCTGCAGCAGGCTGACGAGGAGGACTCGGACGAGGATGGCGA 400881 Query 7328 CAG---CGCCGAGGA--AC-TGGAGATCGAGTACTCGGACCGCGC 7366 | | |||||| || || | |||||||||||| |||||||| Sbjct 400882 CGGTGACGCCGACGACGACATCGAGATCGAGTACGACGACCGCGC 400926 Score = 89.7 bits (98), Expect = 3e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || ||||| ||||| || || || ||||| || |||||||| || ||| |||||| Sbjct 395232 CCCACTAAATACTTCGGATGTGAGCTCGGCGCCCAAACGCAGTTCGACTTCAAGAACGAG 395291 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGA 6424 ||||||||||| ||||| ||| |||| |||||| ||||||| Sbjct 395292 CGCTTCATCGTCAACGGCAGCCATGACTCCGCCAAGTTGCAGGA 395335 >seq2787 Length=76071 Score = 145 bits (160), Expect = 5e-30 Identities = 174/235 (74%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | |||||| ||||| |||||||| || ||||||||||| || | Sbjct 39737 CATT-CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGT 39679 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | ||| |||| || ||||| ||||| || || || | ||||||||||| | Sbjct 39678 CAGAAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTG 39619 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||| ||||| |||||| || ||||| | | |||||| | || Sbjct 39618 GAGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTT 39559 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||||| || ||||| ||||||||||| | |||||||| || |||||||| || Sbjct 39558 CAACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 39504 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| ||||| | || || || | ||| || ||||| || ||||| |||| Sbjct 40191 TACCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAG 40132 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || |||||||| || || ||||| || || ||||||||||| | | Sbjct 40131 ACAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAG 40072 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| ||||| |||||||| | | || || | ||||| Sbjct 40071 GAATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAA 40012 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| ||||| ||||| || || | ||||| || || || ||||| Sbjct 40011 CTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 39963 Score = 118 bits (130), Expect = 7e-22 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||| || || || || ||| || ||||||||||||| Sbjct 40877 CATT-CCACCACGGAGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAAT 40819 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||||||| || | || || ||||| ||||| ||||| || || |||||||| || | Sbjct 40818 CAGACAAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGTTGTTGGTCTG 40759 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| ||| || || ||| ||||| || ||||||| || || || || Sbjct 40758 GGGGGATGCCCTCCTTATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTT 40699 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | ||||| || || || ||||| ||||| || ||||| ||||| Sbjct 40698 CTACTTCCAGGGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 40647 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||| ||||| || || || || | |||| ||| || ||||||||||| |||| Sbjct 41331 TACCTCCTCGTAAACGTAATACTAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAG 41272 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || || | || || || || || || || ||||||||||| | || Sbjct 41271 AAAGAGTACGCCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGG 41212 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || |||||||| || || || ||||| | | ||| ||| ||||| Sbjct 41211 GAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAA 41152 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| |||||||| || |||| || || || || |||||||| Sbjct 41151 CTTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 41103 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| || ||||| || || |||||||||||||| |||||||| || ||| | Sbjct 39949 CGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCA 39890 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || |||| ||||||||| ||||| || || | |||||||| | ||| | || |||||| Sbjct 39889 TCTTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTG 39830 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || || ||| ||||||||| | || ||| || || || ||||| || || Sbjct 39829 TCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATG 39770 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || | || || || || |||||||| Sbjct 39769 GTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 39735 >seq3933 Length=1287 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 353 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 294 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 293 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 259 >seq3932 Length=1132 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 610 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 551 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 550 GGTAATATTTAGCCTTA 534 >seq3927 Length=1014 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 220 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 279 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 280 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 314 >seq3917 Length=1010 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 345 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 404 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 405 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 439 >seq3914 Length=1282 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 514 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 573 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 574 GGTAATATTTAGCCTTA 590 >seq3913 Length=1098 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 963 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 1022 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1023 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1057 >seq3888 Length=1183 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 964 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 965 GGTAATATTTAGCCTTA 981 >seq3886 Length=1119 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 195 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 136 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 135 GGTAATATTTAGCCTTA 119 >seq3879 Length=1240 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 786 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 785 GGTAATATTTAGCCTTA 769 >seq3877 Length=1357 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 321 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 380 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 381 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 415 >seq3854 Length=1202 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 583 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 524 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 523 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 489 >seq3826 Length=1220 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 352 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 411 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 412 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 446 >seq3813 Length=1215 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 638 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 579 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 578 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 544 >seq3102 Length=1067 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 684 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 625 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 624 GGTAATATTTAGCCTTA 608 >seq3079 Length=1116 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1029 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 970 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 969 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 935 >seq3064 Length=1270 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 486 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 427 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 426 GGTAATATTTAGCCTTA 410 >seq3015 Length=1098 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 443 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 444 GGTAATATTTAGCCTTA 460 >seq3026 Length=1143 Score = 132 bits (146), Expect = 3e-26 Identities = 84/91 (92%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1053 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 1112 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987 |||||| |||||||||||||||||||||||| Sbjct 1113 TAATCCATTCATGCGCGTCACTAATTAGATG 1143 >seq3424 Length=494560 Score = 127 bits (140), Expect = 1e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||| | |||||| || ||||| | ||| |||||| || ||||| || | Sbjct 290209 CATT-CCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGT 290151 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | ||||| ||| | || || | ||| |||||||| || || || | ||||||||| | Sbjct 290150 CCGACAATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTG 290091 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||| ||||| ||| ||| ||| ||||| | | || || | | Sbjct 290090 GAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCTATTGTGTCAGAAGCCT 290031 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || ||||||||||| || ||||| |||||||| || || ||||| Sbjct 290030 CCACTTCCAAGGTAATAGTTTTGCCAGTCAATGTTTTCACAAAAATTTGCAT 289979 Score = 122 bits (134), Expect = 6e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| || | |||| |||||| || | ||| |||||||||||||| |||| Sbjct 289297 CATT-CCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAAT 289239 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| |||| | || || | |||||||| ||||| || || | ||||| || | Sbjct 289238 CTGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAG 289179 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||||||| ||||||| ||| ||||| | | ||||| | | Sbjct 289178 GAGGAATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCT 289119 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| ||||| |||||||| || |||| || || || ||||| ||||| Sbjct 289118 CCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 289067 Score = 113 bits (124), Expect = 3e-20 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| |||| |||| ||| | ||| ||||| ||||||||||| | Sbjct 289753 CATT-CCACCTCTCAGCCGCAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGT 289695 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | ||| | || || | || ||||| ||||| || || | ||| ||||| | Sbjct 289694 CAGATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTG 289635 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | ||| ||||| ||| |||||| ||| ||||| | | ||||| | || Sbjct 289634 GGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTT 289575 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| ||||| ||||| || || |||| || || || ||||| ||||| Sbjct 289574 CCACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 289523 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| ||| | || ||||| | ||| || || ||||||||||| || || Sbjct 289977 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGAT 289918 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | |||| | || || | ||| ||||| ||||| || || | |||||| || | || Sbjct 289917 AGTGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGA 289858 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || || |||||| ||| ||||| | || || || |||||| Sbjct 289857 ATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACT 289798 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||| ||||| || || |||| || ||||| ||||| ||||| Sbjct 289797 TCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTCACAAATATTTGCAT 289751 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| |||| |||| || | ||| ||||| ||||||||||| | Sbjct 289525 CATT-CCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGT 289467 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | ||| | || || | || ||||| ||||| || || | ||| ||||| | Sbjct 289466 CAGATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTG 289407 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || ||||| ||| |||||| ||| ||||| | | ||||| | || Sbjct 289406 GGGGAATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTT 289347 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || ||||| || || |||| || || || || || ||||| Sbjct 289346 CCACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 289295 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| || | || | || | ||| || || ||||| ||||||| Sbjct 289069 CATT-CCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAAT 289011 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | ||| | || || | || ||||| ||||| || || | ||| ||||| | Sbjct 289010 CAGATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTG 288951 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || ||||| ||| |||||| || ||||| | | ||||| | | Sbjct 288950 GGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGCT 288891 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || || ||||| || || |||| || || ||||| || ||||| Sbjct 288890 CAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCAT 288839 >seq1305 Length=286731 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||||||||| ||||| |||||||| |||| | || |||| |||||| || ||||| Sbjct 24794 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAG 24853 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | ||||| || || | || | ||||| || || ||||| || ||||| Sbjct 24854 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTT 24913 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | |||||| || || || | ||||| ||||||||||| | ||| || ||| Sbjct 24914 TCTATAGTATCGGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACG 24973 Query 38307 AATATCTGCAT 38317 || || ||||| Sbjct 24974 AAAATTTGCAT 24984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334929609933779