Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3345 518 4e-142 seq1351 84.2 3e-11 >seq3345 Length=207354 Score = 518 bits (574), Expect = 4e-142 Identities = 1101/1623 (68%), Gaps = 43/1623 (3%) Strand=Plus/Minus Query 61830 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 61889 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 113397 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 113338 Query 61890 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 61949 |||||||||| ||||||| ||| | |||| ||| ||||| || ||| ||||| Sbjct 113337 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 113278 Query 61950 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62009 ||| | || | || | ||| || || | |||||||||||| || || || ||||| | Sbjct 113277 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 113218 Query 62010 TGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 62068 | || || ||||| | ||| || || ||| ||| ||||| | ||||| || || | Sbjct 113217 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 113158 Query 62069 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATC 62125 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 113157 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 113099 Query 62126 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 62185 ||| || || || |||| ||| || | | || ||| | | || ||||| | Sbjct 113098 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 113039 Query 62186 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62245 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 113038 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 112979 Query 62246 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62305 || | ||| ||| | || || | |||||| ||||| || ||||||||||| || || | | Sbjct 112978 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATTGGAGCTATC 112919 Query 62306 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 62363 |||| | ||| | | ||| ||||| || || || ||||| || | |||| | || Sbjct 112918 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGGCAGCCCAGTCCC 112861 Query 62364 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 62422 |||| || | || || || ||||| | || || | || Sbjct 112860 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 112801 Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 ||| |||||| ||||| ||||| || ||||||| ||||||||| || |||||| Sbjct 112800 TC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 112742 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 ||||| |||||||| ||||| || || | | ||| ||| | |||| | || || Sbjct 112741 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 112682 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 | | | | | | | |||||| ||||| | || |||||||||||||| |||||| Sbjct 112681 TAAGAAATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGT 112622 Query 62603 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62662 ||||||||| |||| || ||| ||||| || | ||||||| |||||| ||| |||| | Sbjct 112621 CTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACT 112562 Query 62663 TTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 62719 || || | |||| | ||||| ||||| | || || | ||| ||||| |||| Sbjct 112561 TTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAAT 112505 Query 62720 CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCA 62779 | || | ||||||||||| | ||| | || || || || || || || || ||| Sbjct 112504 CTATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCA 112445 Query 62780 TTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 62836 | | || | | ||||| | | ||||||||||||||| ||||| || || || || Sbjct 112444 T---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCA 112388 Query 62837 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 62896 | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| |||||| Sbjct 112387 AGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCA 112328 Query 62897 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG 62956 || || | || | ||||||||| | ||||| | || |||| | | | | ||| Sbjct 112327 GTCTCTACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTTTA 112270 Query 62957 TATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 63014 || || ||| |||| || ||| | ||| | | ||| || || ||||| || || Sbjct 112269 TAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AAGCAG 112211 Query 63015 TGTCC-AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC--- 63070 | | || |||||||| |||| |||||||| | ||| || |||||||| Sbjct 112210 TCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCATCCTTTTCT 112154 Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 |||| ||||||||| ||||| || ||||| | || ||| || ||||| | ||| | Sbjct 112153 ACTCTTTTCATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTAGCTCTCATT 112094 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 || || || || || ||||| || | ||| | ||| | | || || | |||||| || Sbjct 112093 TCTTCCTTACCCGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCTGCATGCCAAGGC 112034 Query 63191 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63250 || || || || || | | || || ||||||||||| || ||||||| ||||| || Sbjct 112033 TCTAAATAAATCGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCA 111974 Query 63251 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAG 63310 || || ||||| |||||||||||||| | | |||||| || ||||| || || | Sbjct 111973 GTATTGTTATACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGCCAGCT 111914 Query 63311 ATATAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCAT 63366 || || || ||| || | || || || || || |||||| || || || Sbjct 111913 ATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAGA 111858 Query 63367 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 63426 |||||| |||||||| ||| ||||||| |||||| | || || || || ||||| || | Sbjct 111857 TTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTT 111798 Query 63427 CAT 63429 ||| Sbjct 111797 CAT 111795 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 ||| |||||||| |||||||| || ||| ||||||||||||| ||||||||||| ||||| Sbjct 111270 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAATTGTA 111211 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 | ||| |||| || |||| |||| | |||| | ||| ||||| | ||| Sbjct 111210 TTTAAAATCTCTATCATAAACAATAGCAGAGTCTAATTTGTCCTTGTTTTT 111160 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 110521 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 110462 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 110461 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 110402 Query 63941 GTTACACCATTATATATTCC 63960 ||||||||| |||||| || Sbjct 110401 GTTACACCAGAATATATGCC 110382 >seq1351 Length=825266 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || |||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 602570 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 602629 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 || || || ||||||| ||||| || |||||||| | | ||||||| Sbjct 602630 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTTT 602678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633597870996400