Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq3463 269 3e-67 seq2396 113 5e-20 >seq3463 Length=282612 Score = 269 bits (298), Expect = 3e-67 Identities = 786/1200 (66%), Gaps = 23/1200 (2%) Strand=Plus/Plus Query 51249 CCCAGGCCCTCGTGCATGGCGTTCAGTAGGTCGCCGTTGTCAGCGTCGATTTCCCACGCA 51308 || || ||| || |||||| ||||||||||| ||||| |||||||| | |||||| ||| Sbjct 181823 CCGAGACCCATGTTCATGGCATTCAGTAGGTCACCGTTATCAGCGTCCACTTCCCAAGCA 181882 Query 51309 AACAATCCCGCCAACCCGTTCGCAAGCACGTACTGGCCCTTGGCGCGAACGGATCGAGCG 51368 || | || | | | ||| || || | ||||| | ||| |||| ||| Sbjct 181883 AAGAGACCACCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACCGATCTAGCA 181942 Query 51369 TTGTCGAACGTGATCAGGTTGCCCGC-GATCGGTTCGAAGCCGTACGCAGCCTCGGCGAT 51427 || || | || | || | || | ||| ||| |||| |||| | || | ||||| Sbjct 181943 TTATCATAGGTTACAAGATCTCCAGTTGAT-GGTCTGAAGACGTAAGGGGCTTGGGCGAC 182001 Query 51428 CAGATCGTAGTAGAACTCGTAGT--CTTTGA-CGAACTCGTTCGCGATCTGCCGATAGTC 51484 ||||| | |||||| | | | |||| ||| || ||||| |||| || |||||| Sbjct 182002 ATTGTCGTAATGGAACTCCCACTTGCCTTGAGCGATTTCATTCGCAATCTCCCTATAGTC 182061 Query 51485 GACCACCCCATTTTCCCAGGTGCCTTCGATGGGTCCGCCGGCGACGCCGCTGAACCAGTT 51544 ||||| || | || ||| || |||| || ||||| ||| ||| |||| | Sbjct 182062 AACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGAAT 182121 Query 51545 CGGTTCGTAGTCGTAGCCGGTCACGTTCGACCAGCCGCGAGCGTACATCGCCACGCCGAC 51604 ||| || | ||| | ||| | ||| || ||| | ||||| || || || || Sbjct 182122 --GTT-GTCTTTGTAATCATGAACGCCAGTCCAACCACGACCATACATAGCAACACCTAC 182178 Query 51605 GACGATCTTCT---GATTGCGCACGCCCTGTTCGAGAAGCGACGACACGGCATAGTCGGT 51661 || ||||||| |||| ||| ||||| | || | | || | |||| | Sbjct 182179 TACAATCTTCTTAGGATT---CACTCCCTGCGCCAGCAAGTATTTTACTCCGAAGTCAGA 182235 Query 51662 GGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAACAGTGTGGTCTGGTAGCCCAGATC 51721 ||||| |||| | ||| ||||| |||||| ||| || || || | || ||| Sbjct 182236 TGTGTAAGTTTCCTTGGGATTCCACGCTGGCGCGTACAATGGCGTTTGATGTCCAAGAGT 182295 Query 51722 GGTGTTGGACCACGCACCCTTGAAATCGTAGTTCATGAGGAAAATGTAATCCAACTGCGT 51781 | || ||||| || |||||||| ||||| |||| | |||||| | ||||| | | Sbjct 182296 GTCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATT 182355 Query 51782 CTGCGCCCGAGCGTAGTCGACGACTTGAATTTTATCGTAGCCCGCGCTGATGGCGCTGGT 51841 || ||| | ||||| || ||||| |||||||| | || ||||| || || || Sbjct 182356 TTGAGCCTTGCCATAGTCTACAACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGT 182415 Query 51842 CAACAGGTA---CGAACGGTTCGTGGCGGCGCTCAACTCGTCGAGCATGTCGCGCAGCTC 51898 || ||| | || ||| | || | | | |||||||||||| || || | || Sbjct 182416 TAATTCGTATTTCTTACCATTCTTAGCTGAG---AGCTCGTCGAGCATCTCACGTAATTC 182472 Query 51899 GGTCAAAAGCGTCACGTACGTCGCACCATCGCGATCGGGATCGCCCAGGTCGGGATTGGC 51958 ||| | | || || ||||||| || || || ||||| || || || Sbjct 182473 TTTCATCAAACTTACATAACAATCACCATCT---TCTGGGCTACCGAGGTCAGGGTTAGC 182529 Query 51959 GCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCGAAGAACTTCCAAGTCAG 52018 |||||||| || || |||||||| |||| || || || |||||||| ||||| || || Sbjct 182530 ACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAG 182589 Query 52019 CAGAAACTCGCGAACCGATTCGACGAAGGTTGCGCGTTTGCTCGCGTCGTGCAGGAAGAA 52078 |||||||| || || | || || || | || ||| | ||||| Sbjct 182590 AAGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACTAAAAAGAA 182649 Query 52079 GAACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATCTTGAGCGAAGGATTGGC 52138 ||| ||||||| |||||||| || || || ||||| |||||||| | ||| ||| Sbjct 182650 GAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGC 182709 Query 52139 CCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGGATCGTTCCAGGCCGAGAC 52198 |||| | ||| | || |||||||| || ||||| || |||||||| | || | Sbjct 182710 TTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAAGGCTCGTTCCATGAAGACAA 182769 Query 52199 GCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATCGTCACCTTAAAGTCCGA 52258 ||||| || ||||| || | || ||||| |||||||| || | || || |||||| Sbjct 182770 TCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTC 182829 Query 52259 CCTGCCCACGCACGACCGTTGCAACGCTTCGAAACTGTTGTCGATCGGTTTCAGGCTGTC 52318 | ||| || ||||| || | |||| ||||||| |||||| ||| | || || Sbjct 182830 ACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAACTATC 182889 Query 52319 GTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAGCAGATGCGACAGGTTCGG 52378 ||||||||||| || ||||| || || || |||||||| |||| ||| | || || || Sbjct 182890 ATTGATGCCGTCACCGCCGCAAATTGGGATAAAGCCGTAGAGCAAATGAGTAAGATTAGG 182949 Query 52379 CAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCCCCATTCGACAAAGTAGGC 52438 | || | |||| ||||| || || | || || |||||||| || |||||||| Sbjct 182950 TATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTAGGC 183009 >seq2396 Length=191974 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 38443 ACTGGCCCAAGAGCATGAAGCAGACGCCGCAACAGTTGGCCGAGGCCGGCTTCTACTATT 38502 ||||||| || |||||||||| ||| | | | ||||| || || |||| ||| Sbjct 136569 ACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGATTCTTCTACA 136628 Query 38503 CGGGCACCGGAGACCAGGTCAAATGTTTCTTTTGCGGCGGCGGCCTTAAGGACTGGGAGC 38562 | ||| || ||| | || || |||| || | |||||| || |||||||||||| Sbjct 136629 CCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGACTCAAGGACTGGGAGA 136688 Query 38563 CTGCGGACGATCCGTGGGCGCAGCACGCGCGCTGGTTCGACAGGTGCGCTTACGTGCTCA 38622 | |||| ||||||| |||||||||||||||||||||| ||||||| ||||||| Sbjct 136689 ACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTGCAGC 136748 Query 38623 CCGTCAAAGGCGCCGACTACGTTCA 38647 ||||||||| || ||||| || Sbjct 136749 TGGTCAAAGGCCGAGAGTACGTCCA 136773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537574243347640