Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1351 159 4e-34 seq896 143 3e-29 seq3415 141 1e-28 seq3460 134 2e-26 seq2217 134 2e-26 seq1521 134 2e-26 seq1606 129 7e-25 >seq1351 Length=825266 Score = 159 bits (176), Expect = 4e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 ||| | ||| ||||| || ||||| | ||| ||||| || ||||| ||||| ||||| || Sbjct 602220 ATCCCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGC 602279 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 |||||| || || ||||| || || ||||| || | || || ||||| ||||| | ||| Sbjct 602280 AATTTGAAAACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAAAAACGCTC 602339 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 || | || ||||| || |||||||| || || ||||| || || || | |||||| || Sbjct 602340 CACCAAGTTCTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTAAAACATGCTTGAT 602399 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 ||||||||||||| |||||| | | |||||||| Sbjct 602400 AAAATGTTTCTCACAATCTTTTAATGTCTCCCAATC 602435 Score = 156 bits (172), Expect = 5e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 ||||| ||||| || || || || | ||| |||||||| || | |||||||||||||||| Sbjct 601414 TCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTCAACCAAAATATTGAAGCA 601473 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || || || || |||||||| || || || |||||||| || | |||||||| |||| Sbjct 601474 AAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAGCAATTATACGTTCTCCAAAT 601533 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 | || | || |||| |||||| | ||| ||||| || || || ||||||| ||| ||| Sbjct 601534 GTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTGCCTTCTTCTTAACACATGGT 601593 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATC 93342 || ||||| || || || |||| | |||| Sbjct 601594 AGAGTTTCAATTGCATTGAATAAGAAATC 601622 Score = 125 bits (138), Expect = 8e-24 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649 || |||||||| ||||||||||||||||||| |||||||| ||||| | |||||| ||| Sbjct 602579 TCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGCCATATATCT 602638 Query 93650 TGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCTAGT 93709 ||||||| ||||| ||||| |||||||| |||| || || | | | || || ||| Sbjct 602639 GGATATTGGATTGGGAATATAACAAAACGTCTAGGATTTTCCCTCAACAGGGGTTCAAGT 602698 Query 93710 TGTGGGTCAAAC 93721 |||||||||||| Sbjct 602699 TGTGGGTCAAAC 602710 >seq896 Length=399071 Score = 143 bits (158), Expect = 3e-29 Identities = 94/103 (91%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| Sbjct 251923 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATTGGGAGCG 251864 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAAttttt 126366 |||||||||||||||||||||||| ||||| ||| |||| || Sbjct 251863 TGGGTTCGAACCCCACACCTGACATATTATAATTATAATTGTT 251821 >seq3415 Length=568690 Score = 141 bits (156), Expect = 1e-28 Identities = 87/92 (95%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 175821 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATTGGGAGC 175880 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||||||||||||||||||||||| || Sbjct 175881 GTGGGTTCGAACCCCACACCTGACAAATTTTT 175912 >seq3460 Length=473000 Score = 134 bits (148), Expect = 2e-26 Identities = 98/110 (89%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 126247 TTTTGCGCTTCTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATC 126306 |||||| ||| ||| | |||||||||||||||||||||||||||||||||||||| || Sbjct 313615 TTTTGC-CTTATATAAAACGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTC 313673 Query 126307 TGGTTCCC--TCGGGAGCGTGGGTTCGAACCCCACACCTGACA-AATTAT 126353 |||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 313674 TGGTTCCCGAGAGGGAGCGTGGGTTCGAACCCCACACCTGACATAATTAT 313723 >seq2217 Length=136328 Score = 134 bits (148), Expect = 2e-26 Identities = 86/93 (92%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 39842 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGGGGGAGC 39783 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||||||||||||||||||||||||| | ||| Sbjct 39782 GTGGGTTCGAACCCCACACCTGACAAACTTTTA 39750 Score = 129 bits (142), Expect = 7e-25 Identities = 87/95 (92%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGG--AGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| Sbjct 38540 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGGGGAAGC 38481 Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATTATTAT 126356 ||||||||||||||||||||||||| | || |||| Sbjct 38480 GTGGGTTCGAACCCCACACCTGACAGACTTTTTAT 38446 >seq1521 Length=413681 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 268828 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 268887 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||||||||||||||||||||| Sbjct 268888 TGGGTTCGAACCCCACACCTGACAAATT 268915 >seq1606 Length=1333114 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 449822 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGGGAGGGAGCG 449881 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 449882 TGGGTTCGAACCCCACACCTGACAA 449906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556830806085160