Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3463 230 2e-55 seq3424 118 8e-22 seq2787 96.9 2e-15 >seq3463 Length=282612 Score = 230 bits (254), Expect = 2e-55 Identities = 414/596 (69%), Gaps = 27/596 (5%) Strand=Plus/Plus Query 84237 GGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTC 84296 ||||| || |||||||| || || || ||||||||||| || ||||| ||||| |||||| Sbjct 182522 GGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTC 182581 Query 84297 CATACTTGTAAAAACTCCTTAACCGAATTTACAAAAACGT-TTCTTTTTTCAACATTGTG 84355 ||| | | | ||||||||| || || | ||||| ||| |||| || | ||| || Sbjct 182582 CATGTTAGAAGAAACTCCTTTACTGACTGCACAAAT-CGTGTTCTCTT----AGATT-TG 182635 Query 84356 CATGAAATAAAACG------GGTCCGACAA-CGTCCATCCTCCTATGGACGGAAGAATCT 84408 | || ||||| | || || ||| |||||| || || || || |||||||||| Sbjct 182636 --TCAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCT 182693 Query 84409 ----TTAGGTGCGGGTTCGCCAATTTAGCTGCCATCAATTGTCCAAAATTGCCTTTATAC 84464 || | ||||| | | ||||| || ||| ||||| ||||| |||||||| || Sbjct 182694 TCAATTCAGGGCGGGCTTG---TTTTAG-TGACATTAATTGGCCAAAGTTGCCTTTGTAA 182749 Query 84465 GGTTCGTTCCAAGCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGG 84524 || |||||||| | |||| || ||||| || ||||||| || ||||| ||||||||| Sbjct 182750 GGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGG 182809 Query 84525 ATGGCAATTTTAAAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCG 84584 || | | ||| || ||| |||| || || || || || || || | || |||||| || Sbjct 182810 ATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCT 182869 Query 84585 GGTATCACTTTGAGAGCATCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTAC 84644 ||| |||| | | ||| || || || | |||||||||||| || || || ||||| Sbjct 182870 TCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGGATAAAGCCGTAG 182929 Query 84645 AACAAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACT 84704 | ||| || | | ||| || | || | || ||||| || || | || || Sbjct 182930 AGCAAATGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACA 182989 Query 84705 CCCCATTCAACAAAATACGCAGCAACCGTTTTATCGTCTCTT---CTGCCCGGTTTGTTG 84761 |||||||| || || || ||| | || ||| | | || || ||| || || Sbjct 182990 CCCCATTCTACGAAGTAGGCACCCACAACTTTTCCAGATGTTTGCTTGAACGGCTTATTT 183049 Query 84762 TTTTCCCGCCATGTATATTCCAGCGGAGCCAAATGACCGCCGTCGGTGTCTGCCAC 84817 ||||| | | ||||||||||||| |||| ||||||| || ||||| || ||||| Sbjct 183050 TTTTCTCCCAATGTATATTCCAGAGGAGGTAAATGACTTCCATCGGTATCGGCCAC 183105 >seq3424 Length=494560 Score = 118 bits (130), Expect = 8e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || ||| | || ||||| || || || ||||| |||||| | Sbjct 289522 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTC 289581 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| ||||||||||| | || | | || Sbjct 289582 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 289641 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTA--AAAACTATGGCCGATTAC 22010 || |||||||| |||||||| || || || |||||| | | ||||| | || ||| Sbjct 289642 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGACTAC 289699 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||||||||||||| | ||| ||||| | || | |||| ||| Sbjct 289700 AATATTCAGAAGGAATCTACTTTGCATCTGGTACTGCGGCTGAGAGGTGGA 289750 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || ||| | || |||||||| || || ||||| ||| || | Sbjct 289066 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAGGCTTC 289125 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| ||||||| || ||||| || | ||| |||| Sbjct 289126 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 289185 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| ||||| ||||| || ||||| || |||||| | || || | ||||| || Sbjct 289186 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAA 289245 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||| |||||||||||| | || |||| Sbjct 289246 TATTCAAAAGGAATCTACTTTGCACTTGGT 289275 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || ||| | || ||||| || || || ||||| |||||| | Sbjct 289294 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAAGCTTC 289353 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| |||||||||||| | || | | || Sbjct 289354 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGTATTCCCCCAGATCA 289413 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTA--AAAACTATGGCCGATTAC 22010 || |||||||| |||||||| || || || |||||| | | ||||| | || ||| Sbjct 289414 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGACTAC 289471 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||||||||| ||| | || ||||| | || | |||| ||| Sbjct 289472 AATATTCAGAAGGAATCAACTTTGCACCTGGTACTGCGGCTGAGAGGTGGA 289522 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || ||| | || ||||| || || || ||||| || || | Sbjct 289750 AATGCAAATATTTGTGAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 289809 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| ||||| || || | ||| | |||| Sbjct 289810 TGACACAATCGAAAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCTCCAGACCA 289869 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTA--AAAACTATGGCCGATTAC 22010 ||| || ||||| |||||||| || ||||| || ||| | | ||||| | || ||| Sbjct 289870 ACAAAGGCTTATTTTTGCTGGAAAGCAACTTGAGGATGGACGTACACTAT--CAGACTAC 289927 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| ||||||||| | ||| | ||| | ||| | |||| || Sbjct 289928 AATATTCAGAAAGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 289977 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || ||| | || ||||| || || || ||||| || | | Sbjct 288838 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 288897 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || |||| |||||| ||||||||||| | || | | || Sbjct 288898 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 288957 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTA--AAAACTATGGCCGATTAC 22010 || |||||||| |||||||| || || || |||||| | | ||||| | |||||| Sbjct 288958 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGATTAC 289015 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| ||||||||| | || | ||| |||| | |||| ||| Sbjct 289016 AACATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGGA 289066 >seq2787 Length=76071 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| |||| || || ||||||||| ||||| |||| || | Sbjct 40191 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 40250 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || | || ||||| || |||||||| | ||||| | Sbjct 40251 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTG---AT 40307 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||| | |||||||||||||| || ||| | |||||| || || | || ||| Sbjct 40308 CAGCAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTAC 40367 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| ||||| |||||| | ||| | ||| | ||||| || Sbjct 40368 AACATCCAGAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG 40417 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | |||||| | || || ||||| || || ||||| || | | Sbjct 40874 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATC 40933 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || |||| || ||| ||||| || || | ||| | | || Sbjct 40934 AGACACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 40993 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | |||||||| ||||| |||||||| |||||| || || | || ||||| Sbjct 40994 ACAACGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACAA 41053 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| ||||| || || || ||||| ||||| | ||| | |||||||| Sbjct 41054 TATCCAGAAAGAGTCGACCCTTCACTTGGTACTCCGTCTCCGAGGAGG 41101 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || ||| |||| ||||| || || || |||| ||| | | Sbjct 40419 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAGGTGGAGCCATCT 40478 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| |||||||||||| | || | | ||| Sbjct 40479 GACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAA 40538 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | ||||||||||||||||| || ||||||||| || || | || ||||| Sbjct 40539 CAACGTCTTATCTTTGCTGGCAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAAC 40598 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || || ||||| |||||| | ||| | ||| | ||||| || Sbjct 40599 ATCCAAAAAGAGTCTACCCTTCATTTAGTACTGCGTCTGCGAGGTGG 40645 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCG- 21891 |||||| || ||| |||| || | || || |||||||| || | || || |||| Sbjct 39734 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGA-GCCGT 39792 Query 21892 CAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACC 21951 | || || | | || | ||| ||| || || ||||||||| | || | | | Sbjct 39793 CCGACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATC 39852 Query 21952 AACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACA 22011 ||||||| ||||| |||||||| ||||||||||||||| || | | ||||| | Sbjct 39853 AACAGAGGCTTATTTTTGCTGGAAAACAACTAGAAGATGGCCGTACATTATCTGATTATA 39912 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 ||||||| ||||||||||| || ||| | ||||| || Sbjct 39913 ATATTCAAAAGGAATCTACCCTACATTTAGTATTGCG 39949 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | |||||||| || || || ||||||||| ||||| ||| | | Sbjct 40647 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 40706 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||| ||||| ||||| | || | ||||| Sbjct 40707 GACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAA 40766 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | || || |||||||| || ||| | |||||| ||| || | ||||||||| Sbjct 40767 CAACGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 40826 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| || || || || || Sbjct 40827 ATTCAGAAAGAGTCAACCCTGCA 40849 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || ||| | |||||| | ||||| ||||||||||| ||||| ||| | Sbjct 39503 CAAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACC 39562 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || | || |||||| || || || || | ||| | | Sbjct 39563 TTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGA 39622 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||| | | || || ||||| || ||| | ||||| | ||| | | || || Sbjct 39623 TCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACTA 39682 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| || |||||||||||||| ||||||| ||| | || || ||| Sbjct 39683 TAATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGGA 39734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358105992740386