Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1305 150 4e-31
seq2787 143 6e-29
seq3424 127 5e-24
>seq1305
Length=286731
Score = 150 bits (166), Expect = 4e-31
Identities = 179/243 (74%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| ||||| |||| ||| || ||||| | ||| ||| ||||| || || ||||| |
Sbjct 24758 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 24817
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||||| ||||||| |||||| || || ||||||| ||| || || |||
Sbjct 24818 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGA 24877
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| ||||| |||||||| ||||| || |||||||||| |||| | || ||
Sbjct 24878 ATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTCCACC 24937
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCTAA 288486
||||| || || || || || || || ||||||||||| || |||||| || | | |||
Sbjct 24938 TCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTGAGACTGTAA 24997
Query 288487 TAT 288489
|||
Sbjct 24998 TAT 25000
>seq2787
Length=76071
Score = 143 bits (158), Expect = 6e-29
Identities = 176/239 (74%), Gaps = 6/239 (3%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | | ||| | |||| || ||||||||| ||||||||||| |
Sbjct 39734 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGA 39675
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363
|| |||||||||||||| ||||| ||||| ||||| |||| ||| ||||| ||||
Sbjct 39674 AAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTG---ATCTGG 39618
Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
|| || ||||| || || || ||||| ||||| || ||||| |||| |||| | |||
Sbjct 39617 AGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTC 39558
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481
||||| | || || || || || || || || || || || ||||||||| || |||
Sbjct 39557 AACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGATAT 39499
Score = 141 bits (156), Expect = 2e-28
Identities = 170/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | |||||| | ||| | || |||||||||||| |||||||| |
Sbjct 41557 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 41498
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || ||||| ||||| || || ||||| ||||||||||| ||||||
Sbjct 41497 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTG---GTCTGGG 41441
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || ||||| ||||| || || || || ||||| |||| ||| | ||
Sbjct 41440 GGAATGCCCTCCTTATCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCC 41381
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| |||||||| || |||||||| || || ||||||||
Sbjct 41380 ACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 41331
Score = 114 bits (126), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||||| | ||||| || ||||||||||| || ||||| |
Sbjct 40645 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 40586
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||||| || || || || ||||| ||||| ||||| |||||||
Sbjct 40585 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTG---ATCTGGG 40529
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || |||||||| || || || || || || ||||| || | || | ||
Sbjct 40528 GGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCC 40469
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || ||||| || || || |||||||| ||||| |||||
Sbjct 40468 ACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 40419
Score = 107 bits (118), Expect = 5e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||||||||| || ||||| | || || || || ||||||||||| || || || ||
Sbjct 40154 TTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAA 40095
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|| ||||| |||||| || || |||||||| || |||||||| |||||||| ||
Sbjct 40094 AATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATT 40035
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
||| || | || | ||| ||||| | || || || || || || || || || ||
Sbjct 40034 TTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAAC 39975
Query 288462 GAATATCTGCAT 288473
|| || |||||
Sbjct 39974 AAAGATTTGCAT 39963
>seq3424
Length=494560
Score = 127 bits (140), Expect = 5e-24
Identities = 167/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||| || || || |||| || |||||| |||||||||||||| |
Sbjct 290661 CCACCTCTAAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTCTGAT 290602
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
| ||||| || ||||| | ||| ||||| ||||| ||||| | ||||| ||||
Sbjct 290601 AATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTG---ATCTGGA 290545
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || ||||| ||||| || || || || || || |||||||| | ||| | |||
Sbjct 290544 GGAATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCC 290485
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||||| || ||||| ||||| ||||| || || || |||||
Sbjct 290484 ACTTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 290435
Score = 122 bits (134), Expect = 2e-22
Identities = 147/199 (74%), Gaps = 6/199 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || |||||||||||||| | ||| ||||| || ||||| ||||| ||||| |||||
Sbjct 288802 TTCCTTCTGGATATTATAGTCTGAGAGTGTGCGCCCATCTTCCAATTGCTTTCCGGCGAA 288743
Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|| || | ||||| |||| ||||| ||||| || || || || || || || ||
Sbjct 288742 AATTAGTCTTTGTTG---ATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTGCCTTTAC 288686
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|||||| || | ||| | ||| ||||| | ||||| || ||||| || | ||| ||
Sbjct 288685 GTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTT 288626
Query 288459 GACGAATATCTGCATTATG 288477
||||| || ||||| |||
Sbjct 288625 TACGAAGATTTGCATGATG 288607
Score = 122 bits (134), Expect = 2e-22
Identities = 167/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| | || | ||||| ||||| | || ||| || || ||||| ||||| |
Sbjct 289750 TCCACCTCTCAGCCGCAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGA 289691
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| |||||||| ||||| | || ||||| || || || || | || ||| |||||
Sbjct 289690 TAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGA---TCTGG 289634
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
| || || ||||||||||| |||||||| || || ||||| || | ||| | |||
Sbjct 289633 GGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTC 289574
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||| | ||||| ||||| || ||||| ||||| || ||||| ||||||
Sbjct 289573 CACTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289522
Score = 118 bits (130), Expect = 3e-21
Identities = 166/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| | || | ||||| || || | || |||||| || || || || || |
Sbjct 289066 TCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGA 289007
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| |||||||| ||||| | || ||||| || || || || | || ||| |||||
Sbjct 289006 TAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGA---TCTGG 288950
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
| ||||| ||||||||||| ||||||||||| || ||||| || | ||| | ||
Sbjct 288949 GGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTC 288890
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||| | ||||| ||||| || ||||| ||||| ||||| || ||||||
Sbjct 288889 AACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCATT 288838
Score = 114 bits (126), Expect = 3e-20
Identities = 141/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| ||||| |||||||| || | || || ||||| ||||| | ||||||||||| ||
Sbjct 289258 TTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAA 289199
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|| || | |||||| | || || |||||||| || || ||||| || || || ||
Sbjct 289198 AATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATT 289139
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|||||| | ||| | || ||||| | ||||| || || || ||||| ||||| ||
Sbjct 289138 TTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTAC 289079
Query 288462 GAATATCTGCATT 288474
||||| ||||||
Sbjct 289078 AAATATTTGCATT 289066
Score = 114 bits (126), Expect = 3e-20
Identities = 143/195 (73%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || |||||||||||||| | | |||||||| ||||| | ||| ||||| |||||
Sbjct 290397 TCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAA 290338
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||| | ||||| |||| || || ||||| ||||| || || || || || ||
Sbjct 290337 ATCAGTCTTTGTTG---ATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTGCCTTAACA 290281
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|||||||| | ||| | ||| || || | ||||| || ||||| ||||| |||||
Sbjct 290280 TTTTCTATTGTATCAGAAGCTTCCACCTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTT 290221
Query 288460 ACGAATATCTGCATT 288474
|| || || ||||||
Sbjct 290220 ACAAAAATTTGCATT 290206
Score = 113 bits (124), Expect = 1e-19
Identities = 165/232 (71%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| | || | ||||| || || | || ||| || || ||||| ||||| |
Sbjct 289522 TCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGA 289463
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| |||||||| ||||| | || ||||| || || || || | || ||| |||||
Sbjct 289462 TAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGA---TCTGG 289406
Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
| || || ||||||||||| |||||||| || || ||||| || | ||| | |||
Sbjct 289405 GGGAATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTC 289346
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||| | ||||| ||||| || ||||| ||||| || || || ||||||
Sbjct 289345 CACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 289294
Score = 86.0 bits (94), Expect = 1e-11
Identities = 136/194 (70%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || |||||||||||||| | | |||||||| ||||| | ||| ||||| |||||
Sbjct 290169 TCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAA 290110
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||| | ||||| |||| || || ||||| || || || || || || || ||
Sbjct 290109 ATCAGTCTTTGTTG---ATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACA 290053
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|||||||| | || | || ||||| | || || || || || |||| || ||
Sbjct 290052 TTTTCTATTGTGTCAGAAGCCTCCACTTCCAAGGTAATAGTTTTGCCAGTCAATGTTTTC 289993
Query 288460 ACGAATATCTGCAT 288473
|| || || |||||
Sbjct 289992 ACAAAAATTTGCAT 289979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179589272386502
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