Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_010956.1 Length=35083 Score E Sequences producing significant alignments: (Bits) Value seq3063 412 8e-111 >seq3063 Length=7092 Score = 412 bits (456), Expect = 8e-111 Identities = 344/421 (82%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 11027 GGTGACGGCCTACGAGCAGACGGTGAAGCAGGAGCGCAACTTCCAAAAGAGTTTCAACAA 11086 ||| || || ||||||||||||||||| |||||| ||||| ||||| || || ||||| Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731 Query 11087 CCACGTGCGCACCCTGATCGCGCGCGAGGAGGTGGCCCTGGGCCTGATGCACCTGTGGGA 11146 |||||||||||| || | ||||||||||||||||| | || |||||||| |||||||| Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791 Query 11147 CCTGGCGGAGGCCATCGTGCAGAACCCGGACAGCAAGCCTCTGACGGCGCAGCTGTTCCT 11206 | | | || | | ||| ||||| | |||||||| || | ||||||||||||||| Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851 Query 11207 GGTGGTGCAGCACAGCAGGGACAACGAGGCGTTCAGGGAGGCACTGCTGAACATCGCCGA 11266 | |||||||||||||||||||||||||| |||||||| || ||||| ||||| | || Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911 Query 11267 GCCCGAGGGTCGCTGGCTGCTGGAGCTGATCAACATCTTGCAGAGCATCGTAGTGCAGGA 11326 ||||||||| ||||||||||| || |||| ||||| |||||||||| || |||||||| Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971 Query 11327 GCGCAGCCTGAGCTTGGCCGAGAAGGTGGCGGCGATCAACTACTCGGTGCTGAGCCTGGG 11386 ||||||| ||||| |||| || |||||||| || || ||||| || |||| || ||||| Sbjct 6972 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 7031 Query 11387 CAAGTTTTACGCGCGCAAGATTTACAAGACGCCGTACGTGCCCATAGACAAGGAGGTGAA 11446 |||||||||||| |||||||| ||| | || || ||||| ||||||||||||||||| || Sbjct 7032 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091 Query 11447 G 11447 | Sbjct 7092 G 7092 Score = 145 bits (160), Expect = 2e-30 Identities = 275/404 (68%), Gaps = 27/404 (7%) Strand=Plus/Plus Query 15697 ATGTCAAAGCGCAAAATCAAGGAGGAGATGCTCCAGGTCGTCGCCCCGGAGATTTACGGA 15756 ||||| |||||||||||||| || ||||||||||||||| |||| |||||||| || || Sbjct 618 ATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAGGTCATCGCGCCGGAGATCTATGGC 677 Query 15757 CCACCCCAGGCGGACCAG---------AAACCCCGCAAAATCAAGCGGGTTaaaaa---- 15803 || || || ||| || || ||||| || | |||||||| ||||| Sbjct 678 CCCCCGAAGAAGGAAGAGCAGGATTACAAGCCCCGAAAGCTAAAGCGGGTCAAAAAGAAA 737 Query 15804 ---aaaG--GATGAGG-TGGAC--GAGGGGGCAGTAGAGTTTGTGCGCGAGTTCGCTCCG 15855 |||| ||||| | || || || | | || || | ||| || ||| || Sbjct 738 AAGAAAGATGATGATGATGAACTTGACGACGAGGTGGAACTGCTGCACGCAACCGCGCCC 797 Query 15856 CGGCGGCGCGTAAATTGGAAGGGGCGCAGGGTGCAGCGCGTGTTGCGGCCCGGCACGGCG 15915 ||||||| ||| | ||||| || || | || || || ||||| |||||||| | Sbjct 798 AGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACGTGTTTTGCGACCCGGCACCACC 857 Query 15916 GTGGTGTTCACGCCCGGCGAGCGGTCCTCAGTCAGGAGCAAGCGTAGCTATGACGAGGTG 15975 || || || |||||||| ||||| ||| | || |||||| ||||| |||||| Sbjct 858 GTAGTTTTTACGCCCGGTGAGCGCTCCACCCGCACCTACAAGCGCGTGTATGATGAGGTG 917 Query 15976 TACGGCGACGACGACATCCTGGACCAGGCGGCGGAGCGGGCGGGCGAGTTCGCCTACGGG 16035 ||||||||||| ||| | || || ||||| ||||| || ||||| |||||||| Sbjct 918 TACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCGCCTCGGGGAGTTTGCCTACGGA 977 Query 16036 AAGCGGTCGCGCGAAGAGGAGCTGATCTCGCTGCCGCTGGACGA 16079 |||||| | |||| || | || ||||||||||||| Sbjct 978 AAGCGG------CATAAGGACATGTTGGCGTTGCCGCTGGACGA 1015 Score = 102 bits (112), Expect = 2e-17 Identities = 112/152 (74%), Gaps = 9/152 (6%) Strand=Plus/Plus Query 15131 CCCAGCACCATGTACGGAGGAGCCAAGAAGCGCTCCCAGCAGCACCCCGTCCGCGTCCNN 15190 || |||| |||| || || || |||||||||||| | || ||||| || ||||| | Sbjct 3 CCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGC 62 Query 15191 NNNCACTTCCGCGCTCCCTGGGGCGCTTACAAGCGCGGGCGGACTTCCACCGCCGTGCGC 15250 |||| |||||| ||||||||||| |||| ||||| || ||| | |||| Sbjct 63 GGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACT---------GGGCGC 113 Query 15251 ACCACCGTCGACGACGTCATCGACTCGGTGGT 15282 ||||||||||| |||| ||| ||| ||||||| Sbjct 114 ACCACCGTCGATGACGCCATTGACGCGGTGGT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112138261661610