Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_011202.1 Length=34794 Score E Sequences producing significant alignments: (Bits) Value seq3063 244 2e-60 >seq3063 Length=7092 Score = 244 bits (270), Expect = 2e-60 Identities = 305/416 (73%), Gaps = 4/416 (1%) Strand=Plus/Plus Query 11079 GCTTACGAGCAGACAGTAAAGGAAGAGCGTAACTTCCAAAAGTCTTTTAATAATCATGTG 11138 || ||||||||||| || || | ||| |||||| ||||| ||||| || || ||| Sbjct 6679 GCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAACCACGTG 6738 Query 11139 CGAACCCTGATTGCCCGCGAAGAAGTTACCCTTGGTTTGATGCATTTGTGGGATTTGATG 11198 || || || | || ||||| || || | | || |||||||| ||||||| || || Sbjct 6739 CGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGACTT--TG 6796 Query 11199 GAAGCTATCATT--CAGAACCCTACTAGCAAACCTCTGACCGCCCAGCTGTTTCTGGTGG 11256 |||| | || ||||| | |||||| || || | || |||||||| || | | Sbjct 6797 TAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCTTATAG 6856 Query 11257 TGCAACACAGCAGAGACAATGAGGCTTTCAGAGAGGCGCTGCTGAACATCACCGAACCCG 11316 |||| |||||||| ||||| ||||| ||||| || |||||||| ||||| || |||| Sbjct 6857 TGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGAGCCCG 6916 Query 11317 AGGGGAGATGGTTGTATGATCTTATCAACATTCTACAGAGTATCATAGTGCAGGAGCGGA 11376 |||| | ||| || ||| | || |||||||| ||||| || | ||||||||||| | Sbjct 6917 AGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGAGCGCA 6976 Query 11377 GCCTGGGCCTGGCCGAGAAGGTGGCTGCCATCAATTACTCGGTTTTGAGCTTGGGAAAAT 11436 || || ||||||| || |||||||| ||||| || || || | | || |||| || | Sbjct 6977 GCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGGCAAGT 7036 Query 11437 ATTACGCTCGCAAAATCTACAAGACTCCATACGTTCCCATAGACAAGGAGGTGAAG 11492 |||||| ||||| || ||| | || || ||||||||||||||||||||||| ||| Sbjct 7037 TTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAAG 7092 Score = 161 bits (178), Expect = 2e-35 Identities = 633/987 (64%), Gaps = 65/987 (7%) Strand=Plus/Plus Query 15430 CCAAGCAAGATGTACGGAGGCGCACGCAAACGTTCTACCCAACATCCTGTCCGTGTTCGC 15489 ||||||||||||| || || ||| || || || |||||| || || || || ||| Sbjct 3 CCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGC 62 Query 15490 GGACATTTTCGCGCTCCATGGGGCGCCCTCAA---GGGCCGCACTCGCGTTCGAACCACC 15546 || || | ||||| || |||||||| | ||| ||||||||| | || |||||| Sbjct 63 GGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACT---GGGCGCACCACC 119 Query 15547 GTCGATGATGTAATCGATCAGGTGGTTGCCGACGCCCGTAATTATACTCCTACTGCGCCT 15606 |||||||| | || || |||||| | || || || || || || || || |||| Sbjct 120 GTCGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCCA 179 Query 15607 ACA---TCTACTGTGGATGCAGTTATTGACAGTGTAGTG-GCTGACGCTCGCAACTATGC 15662 || || || ||||| || | ||| | | || ||| || || || || ||||| Sbjct 180 CCAGTGTCCACAGTGGACGCGGCCATTCAGACCGTGGTGCGCGGA-GCCCGGCGTTATGC 238 Query 15663 TCGACGTAAGAGCCGGCGAAGGCGCATTGCCAGACGCCA------CCGAGCTACCACT-- 15714 | | ||||| ||||| |||||| | || | ||||| |||| | |||| Sbjct 239 TAAAATGAAGAGACGGCGGAGGCGCGTAGCACGTCGCCACCGCCGCCGACCCGGCACTGC 298 Query 15715 -GCCATGCGAGCCGCAAGAGCTCTGCTACGAAGAGCTAGACGCGTGGGGCGAAG---AGC 15770 ||| || || || || ||||| | || | ||| || ||| | || Sbjct 299 CGCCCAACGCGCGGCGGCGGCCCTGCTTAACCGCGCACGTCGCACCGGCCGACGGGCGGC 358 Query 15771 CATGCTTAGGGCGGCCAGACGTGCAGCTTCGGG---CGCCAGCG---CCGGCAGGTCCCG 15824 ||||| |||| || || | || |||| | || | || ||||||| | Sbjct 359 CATGC---GGGCCGCTCGAAGGCTGGCCGCGGGTATTGTCACTGTGCCCCCCAGGTCCAG 415 Query 15825 CAGGCAAGCAGCCGCTGTCGCAGCGGCGACTATTGCCGACATGGCCCAATCGCGAAGAGG 15884 | | ||| ||||| | ||||| ||| | ||| | ||| | || || || || Sbjct 416 GCGACGAGCGGCCGCCGCAGCAGCCGCGGCCATTAGTGCTATGACTCAGGGTCGCAGGGG 475 Query 15885 CAATGTATACTGGGTGCGTGACGCTGCCACCGGTCAACGTGTACCCGTGCGCACCCGTCC 15944 ||| || ||||||||||| ||| | | ||| | || || |||||||||||||| || Sbjct 476 CAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCGCACCCGCCC 535 Query 15945 CCCTCGC-ACT-------TAGAAGATACTGAGCAGTCTCCGA-TGTTGTGT---CCCAGC 15992 ||| ||| ||| |||| | ||| || ||| | |||||| | ||||| Sbjct 536 CCCGCGCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGTATGTATCCAGC 595 Query 15993 GGCG--------------AG-GATGTCCAAGCGCAAATACAAGGAAGAAATGCTGCAGGT 16037 |||| || ||||||||||||||| ||| ||||| ||||| ||||| Sbjct 596 GGCGGCGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAGGT 655 Query 16038 TATCGCACCTGAAGTCTACGGCCAACCGTTGAAGG------ATGaaaaaaaaccccgcaa 16091 ||||| || || |||| |||| ||| ||||| | || | || ||||| || Sbjct 656 CATCGCGCCGGAGATCTATGGCCCCCCGAAGAAGGAAGAGCAGGATTACAAGCCCCGAAA 715 Query 16092 aatcaagcgggttaaaaaggacaaaaaaGAAGAGGAAGATGGCGATGATGGGCTGGCGGA 16151 | |||||||| |||||| | || ||||| || || |||| ||| | || ||| Sbjct 716 GCTAAAGCGGGTCAAAAAGAAAAAGAAAGATGATGATGATGAACTTGACGACGAGGTGGA 775 Query 16152 GTTTGTGCGCGAGTTTGCCCCACGGCGACGCGTGCAATGGCGTGGGCGCAAAGTTCGACA 16211 | ||| || || || |||| || || || ||| || || || ||| Sbjct 776 ACTGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACG 835 Query 16212 TGTGTTGAGACCTGGAACTTCGGTGGTCTTTACACCCGGCGAGCGTTCAAGCGCTACTTT 16271 ||| ||| |||| || || | || || ||||| ||||| ||||| || | | || | Sbjct 836 TGTTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACCCGCACCTA 895 Query 16272 TAAGCGTTCCTATGATGAGGTGTACGGGGATGATGATATTCTTGAGCAGGCGGCTGACCG 16331 ||||| ||||||||||||||||| || || || | ||||||||||| || || Sbjct 896 CAAGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCG 955 Query 16332 ATTAGGCGAGTTTGCTTATGGCAAGCG 16358 | || |||||||| || || ||||| Sbjct 956 CCTCGGGGAGTTTGCCTACGGAAAGCG 982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111213508983048