Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_011203.1 Length=35343 Score E Sequences producing significant alignments: (Bits) Value seq3063 288 2e-73 >seq3063 Length=7092 Score = 288 bits (318), Expect = 2e-73 Identities = 312/414 (75%), Gaps = 0/414 (0%) Strand=Plus/Plus Query 11298 GCCTACGAGCAGACCGTGAAGGAGGAGCGCAACTTCCAAAAATCTTTTAACAACCATGTG 11357 || ||||||||||| ||||| ||||| ||||| |||||| ||||||||||| ||| Sbjct 6679 GCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAACCACGTG 6738 Query 11358 CGCACCCTGATCGCCCGCGAGGAAGTGACCCTGGGTCTGATGCATCTGTGGGACCTGATG 11417 ||||| || | || |||||||| ||| | | || |||||||||||||||||| | | Sbjct 6739 CGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGACTTTGTA 6798 Query 11418 GAGGCTATCGCCCAAAACCCCACTAGCAAACCACTGACAGCTCAGCTGTTTCTGGTGGTT 11477 || | | |||||||| | |||||| || || | || |||||||| || | || Sbjct 6799 AGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCTTATAGTG 6858 Query 11478 CAACATAGCAGGGACAACGAGGCATTCAGGGAGGCGTTGTTGAACATCACCGAGCCTGAT 11537 || || |||||||||||||||||||||||||| ||| || | ||||| ||||| || Sbjct 6859 CAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGAGCCCGAG 6918 Query 11538 GGGAGATGGCTGTATGATCTGATCAACATCCTGCAAAGTATTATAGTGCAGGAACGTAGC 11597 || | |||||| ||| |||| ||||| ||||| || || | |||||||| || ||| Sbjct 6919 GGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGAGCGCAGC 6978 Query 11598 CTGGGTTTGGCTGAGAAAGTGGCAGCTATCAACTACTCGGTCTTGAGCCTGGGCAAATAC 11657 || | ||||||| || ||||| || || ||||| || | | || |||||||| | Sbjct 6979 TTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGGCAAGTTT 7038 Query 11658 TACGCTCGCAAGATCTACAAGACCCCCTACGTACCCATAGACAAGGAGGTGAAG 11711 ||||| |||||||| ||| | ||||| ||||| ||||||||||||||||| ||| Sbjct 7039 TACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAAG 7092 Score = 178 bits (196), Expect = 3e-40 Identities = 634/992 (64%), Gaps = 88/992 (9%) Strand=Plus/Plus Query 15607 CAAGATGTATGGAGGCGCCCGCAAGCGCTCTACCCAGCATCCTGTGCGCGTTCGCGGTCA 15666 |||||||| ||| || || |||||||| ||| || || |||||||| ||||| || Sbjct 8 CAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGCGGGCA 67 Query 15667 TTTCCGCGCTCCCTGGGGCGCACTCAAGGGTCGTACCCGCACTCGG---ACCACGGTCGA 15723 | |||||| ||||||||||| | ||| | | ||||||| || ||||| ||||| Sbjct 68 CTACCGCGCGCCCTGGGGCGCGCACAAACGCGG---CCGCACTGGGCGCACCACCGTCGA 124 Query 15724 TGATGTGATCGACCAGGTGGTCGCCGATGCTCGTAATTATACTCCTACTGCGCCTACA-- 15781 ||| | || ||| |||||| | || || || || || || || || |||| || Sbjct 125 TGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCCACCAGT 184 Query 15782 -TCTACTGTGGATGCAGTTATTGACAGTGTGGTG-GCAGACGCCCGCGCCTATGCTCGCC 15839 || || ||||| || | ||| | | |||||| || || || ||| |||||| Sbjct 185 GTCCACAGTGGACGCGGCCATTCAGACCGTGGTGCGCGGAGCCCGGCGT-TATGCTAAAA 243 Query 15840 GGAAGAGCCGAAGGAGGCGCATCGCCAGGCGCCACAG----------GGCTACTCCCGCC 15889 |||||| || |||||||| | || | |||||| | ||| ||| ||||| Sbjct 244 TGAAGAGACGGCGGAGGCGCGTAGCACGTCGCCACCGCCGCCGACCCGGC-ACTGCCGCC 302 Query 15890 ATGCGAGCCGCAAAAGCTATTCT-----GCGGAGGGCCAAACGTGTG--GGGCGAAGAGC 15942 || || || || | || ||| | | | | || | ||||| || Sbjct 303 CAACGCGCGGCGGCGGCCCTGCTTAACCGCGCACGTCGCACCGGCCGACGGGCG----GC 358 Query 15943 CATGCTTAGAGCGGCCAGACG------CGCGGCT----TCAG-GTGCCAGCAGCGGCAGG 15991 ||||| | || || || | ||||| | ||| ||||| | |||| Sbjct 359 CATGC---GGGCCGCTCGAAGGCTGGCCGCGGGTATTGTCACTGTGCCCCC-----CAGG 410 Query 15992 TCCCGCAGGCGCGCGGCCACGGCGGCAGCAGCGGCCATTGCCAACATGGCCCAACCGCGA 16051 ||| | | || |||||| | || ||||| ||||||||| ||| | || || Sbjct 411 TCCAGGCGACGAGCGGCCGCCGCAGCAGCCGCGGCCATTAGTGCTATGACTCAGGGTCGC 470 Query 16052 AGAGGCAATGTGTACTGGGTGCGTGATGCCACTACCGGCCAGCGCGTGCCCGTGCGCACC 16111 || ||||| |||||||||||||| || | ||||| ||||||||||||||||||| Sbjct 471 AGGGGCAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCGCACC 530 Query 16112 CGCCCCCCTCGCACTTAGA--------AGATACTGAGCAGTCTCCGA-TGTTGTGTC--- 16159 |||||||| |||| |||| | | ||| || ||| | |||||| | Sbjct 531 CGCCCCCCGCGCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGTATGTAT 590 Query 16160 CCAGCGGC--------------AAG-TATGTCCAAGCGCAAATACAAGGAAGAGATGCTC 16204 |||||||| ||| |||||||||||||||| ||| |||||||||||| Sbjct 591 CCAGCGGCGGCGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATGCTC 650 Query 16205 CAGGTCATCGCGCCTGAAATCTACGGTCCGCCGGTGAAGG------ATGaaaaaaaGCCC 16258 |||||||||||||| || ||||| || || ||| ||||| | || | |||||| Sbjct 651 CAGGTCATCGCGCCGGAGATCTATGGCCCCCCGAAGAAGGAAGAGCAGGATTACAAGCCC 710 Query 16259 CGCAAAATCAAGCGGGTCAAAA--ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGC-TG 16315 || || | ||||||||||||| | | | | Sbjct 711 CGAAAGCTAAAGCGGGTCAAAAAGAAAAAGAAAGATGATGATGATGAACTTGACGACGAG 770 Query 16316 GTGGAGTTTGTGCGCGAGTTCGCCCCAAGACGGCGCGTGCAGTGGCGCGGGCGCAAAGTG 16375 ||||| | ||| || ||| || || ||||| || |||||| || || || Sbjct 771 GTGGAACTGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTA 830 Query 16376 CGTCAAGTGCTCAGACCCGGGACCACTGTGGTTTTTACACCTGGCGAGCGTTCCAGCACT 16435 | | || | ||||||| ||||| || |||||||| || || ||||| |||| | Sbjct 831 AGACGTGTTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACCCGC 890 Query 16436 ACTTTTAAACGGTCCTATGATGAGGTGTACGGGGATGACGATATTCTTGAGCAGGCGGCA 16495 || | || || ||||||||||||||||| || || || | ||||||||||| Sbjct 891 ACCTACAAGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAAC 950 Query 16496 GACCGCCTTGACGAGTTTGCTTATGGCAAGCG 16527 || ||||| | |||||||| || || ||||| Sbjct 951 GAGCGCCTCGGGGAGTTTGCCTACGGAAAGCG 982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112970219088690