Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3463 194 2e-44 seq2787 116 4e-21 seq1305 116 4e-21 seq3424 98.7 1e-15 seq2396 96.9 3e-15 >seq3463 Length=282612 Score = 194 bits (214), Expect = 2e-44 Identities = 458/679 (67%), Gaps = 16/679 (2%) Strand=Plus/Minus Query 27833 AAAGGCGGCAAGTTCGACATGACAGTGAAGCTGTGCAACGTCGACGGCTGTTCGACAAGT 27892 ||||| || | | | | ||||||||| | || ||||| | ||||||||| ||||| Sbjct 183183 AAAGGTGGAAGATACCAAATGACAGTGGAACTTTGCAATGACGACGGCTGCAGTTCAAGT 183124 Query 27893 -AGCGCGGTCAAAGTGATCGTCGCCGACACCGACGGTTCTCATCTCGCGCCGCTAGTATA 27951 | | | ||| || |||| ||||| ||||| || |||| | | || || | ||| Sbjct 183123 GATCCCACCGAAATTG-TCGTGGCCGATACCGATGGAAGTCATTTACCTCCTCTGGAATA 183065 Query 27952 CGATTTCCTCGAAAACAACAAGCGCTTTGAT-AAACATCCCGAGAAAATTGTGGCCGCCT 28010 || ||||| || |||| || | ||||||| || ||| |||||| |||| Sbjct 183064 TACATTGGGAGAAAAAAATAAGCCGTTCAAGCAAACATCTGGA-AAAGTTGTGGGTGCCT 183006 Query 28011 ATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTCCCGTCGACAAAGTGCCCGCGCCCA 28070 | ||||| || ||||| || |||| || | || ||||| || | || || | Sbjct 183005 ACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATACCTA 182946 Query 28071 ACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAACGACG 28130 | || | || ||||| ||||| || | || || |||||||| |||||||| || || Sbjct 182945 ATCTTACTCATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGTGACGGCATCAATGATA 182886 Query 28131 CCCTCAAGACCGTTCCC-GGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGCC 28189 | || | | || ||||||||| | || || ||||| || || ||| || | Sbjct 182885 GTTTAAA-AGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGTGAG 182827 Query 28190 GACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCGTC 28249 |||||||| || | ||||||||||| ||||| || | || || || ||||| || | Sbjct 182826 GACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTG 182767 Query 28250 TCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGATGAGCGTCAAATTAGCC 28309 ||| | ||||||||||| ||||||||||||||||| ||||| ||| | ||| |||| Sbjct 182766 TCTTCATGGAACGAGCCTTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCC 182707 Query 28310 AATCCGCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCATTC--- 28366 || | |||||| | || | || || || || |||||||| | || || ||| Sbjct 182706 CGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTTCTTC 182647 Query 28367 -TTTCACATGCACGACGCGACCGTGCGCCAAACG-TTCATCGATTCCGTCGTGGACTTTC 28424 ||| | || || | | | | | | ||| || | | || || ||| |||| Sbjct 182646 TTTTTAGTTG-ACAAATCTA-AGAG---AACACGATTTGTGCAGTCAGTAAAGGAGTTTC 182592 Query 28425 TGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAG 28484 | || || ||||| |||||||| || || || |||||||||||||| || || ||||||| Sbjct 182591 TTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAAG 182532 Query 28485 GAGCCAATCCCGATGTCGG 28503 | || || || || |||| Sbjct 182531 GTGCTAACCCTGACCTCGG 182513 >seq2787 Length=76071 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 ||||| || | ||||| |||||||||| | | || ||||||||||| || || || | | Sbjct 39961 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 39902 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || |||||||| || | | | || || | |||||| || || || Sbjct 39901 AAT-GTACGGCCATCTTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGG 39843 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| ||| ||| || | | ||| | ||||||| || ||| || Sbjct 39842 AATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTAC 39783 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || ||||| || ||||| |||||||| Sbjct 39782 CTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 39735 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| |||| ||| | | | |||||||| || ||||||||||| | Sbjct 40417 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 40358 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||| ||||| | | |||| |||||||| || || || || Sbjct 40357 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 40298 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| |||||| ||||| | ||| | || || | | ||||| Sbjct 40297 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 40238 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || ||||| |||||||||||||| Sbjct 40237 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| |||||||| | | | ||||| ||||| ||||||||||| | Sbjct 40645 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 40586 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || || | | |||| ||||| ||||| || || || Sbjct 40585 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGA 40526 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| ||||| || ||| | || | |||| | ||| | |||||| | | |||||| Sbjct 40525 ATACCCTCTTTATC-TTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCAC 40467 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || || ||||| || ||||| Sbjct 40466 CTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 40419 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||||||| | | || || ||||| ||||| ||||| | Sbjct 41557 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 41498 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | |||||||| | | |||| |||||||||||||| || || Sbjct 41497 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 41438 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| || || | | ||| | ||||||| | ||||||| Sbjct 41437 ATGCCCTCCTTATCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACC 41378 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || ||||| |||||||| Sbjct 41377 TCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 41331 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||| | ||||| || | | || || ||||| ||||||||||| | Sbjct 40189 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 40130 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||| || || | | | || ||||| ||||| |||||||| Sbjct 40129 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 40070 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| ||| | | ||| | ||||| | | || || Sbjct 40069 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 40010 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || ||||| ||||| || ||||| Sbjct 40009 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 39963 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || || || | | | ||||| || || || |||||||| | Sbjct 41101 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 41042 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || ||||||||||| | |||| ||||| ||||| || ||||| Sbjct 41041 AGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 40982 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | || | ||||| | ||| | |||||| | | ||| || Sbjct 40981 ATTCCTTCCTTATC-TTGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAAC 40923 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || ||||| ||||| || ||||| Sbjct 40922 TTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCAT 40875 >seq1305 Length=286731 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| || ||||| || || ||||||||||| | | Sbjct 24791 GATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCA 24850 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||| || ||||| || || |||||||| || || |||||| ||||| Sbjct 24851 AAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACA 24910 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || |||| | ||||||||||| || | |||||||| || || || || Sbjct 24911 TTTTCTATAGTATCGGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTG 24970 Query 138601 ACAAAAATCTGCAT 138614 || ||||| ||||| Sbjct 24971 ACGAAAATTTGCAT 24984 >seq3424 Length=494560 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||||||||||||||| | | |||||||| || || || ||||| | Sbjct 290205 CCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGAC 290146 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || ||||| || |||| | || || | ||||| || ||||| Sbjct 290145 AATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 290086 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | |||| |||| | ||| | ||||| | | |||||| Sbjct 290085 ATGCCTTCCTTGTC-TTGAATCTTTGCCTTAACATTTTCTATTGTGTCAGAAGCCTCCAC 290027 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| ||||| |||||||| ||||| Sbjct 290026 TTCCAAGGTAATAGTTTTGCCAGTCAATGTTTTCACAAAAATTTGCAT 289979 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||||||||| || || || || ||||| || || || ||||| || | | Sbjct 289260 GATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCA 289201 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || || | ||||||||| ||||| || ||||||||||| ||| |||||| |||| Sbjct 289200 AAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTC-TTGAATTTTTGCCTTAAC 289142 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || || | | |||||| || | || | ||||| |||||||| || || Sbjct 289141 ATTTTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTT 289082 Query 138600 TACAAAAATCTGCAT 138614 |||||| || ||||| Sbjct 289081 TACAAATATTTGCAT 289067 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||||||||||||||| | | |||||||| || || || ||||| Sbjct 290434 GCCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGA 290375 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || ||||| || |||| | || || | ||||| || ||||| Sbjct 290374 CAATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGG 290315 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| || || ||| | |||| |||| | ||| | || || | | |||| Sbjct 290314 AATGCCTTCCTTATC-TTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCA 290256 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| |||||||| || ||||||||||| ||||| Sbjct 290255 CCTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 290207 >seq2396 Length=191974 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 124741 GGCTTCTACTACATGGGCGTCGGCGACGAAGTGCGTTGCGCTTTCTGCAAAGTCGAAATT 124800 |||||||| || ||||| |||||| ||||| || ||||| || || ||||| |||||| Sbjct 136268 GGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATT 136327 Query 124801 ATGCGATGGCAGCCCGGCGACGAT-CCGCTAACGGACCACAAACGATGGGCGCCTCAGTG 124859 ||| |||| | ||||||||| |||| || ||||||| | || |||||||||||||| Sbjct 136328 ATGAAATGGGTTGCGGGCGACGATCCCGCCAA-GGACCACCAGCGCTGGGCGCCTCAGTG 136386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496235670066480