Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3463 264 1e-65 seq3345 230 2e-55 seq3424 131 2e-25 seq1305 127 2e-24 seq2787 118 1e-21 >seq3463 Length=282612 Score = 264 bits (292), Expect = 1e-65 Identities = 606/897 (68%), Gaps = 29/897 (3%) Strand=Plus/Plus Query 50157 TAATCAACTACGCCGTCTTCCCAAGTGCCTGCCGCCGGGCCGGTGGCGATTCCCGTAAAC 50216 || ||||| || ||||||| |||||| ||| | || || || ||| | || || || Sbjct 182057 TAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 182116 Query 50217 GGATTGTCGTCTTTGTAGCCGGTCACGCCGCGCCAACCCCTGCCGTACATGGCCACGCCT 50276 ||| ||| ||||||||| | ||||| |||||| | || ||||| || || ||| Sbjct 182117 GGAATGTTGTCTTTGTAATCATGAACGCCAGTCCAACCACGACCATACATAGCAACACCT 182176 Query 50277 ACGATTATTTTGCTCGGCTGCACGTTTTGATCGAG-AAGAACGTTTACCGCAAAATCGGT 50335 || | || || | || | ||| || | || ||| | ||||| | || || | Sbjct 182177 ACTACAATCTTCTTAGGATTCACTCCCTGCGCCAGCAAGTAT-TTTACTCCGAAGTCAGA 182235 Query 50336 CGTGTACTTTTCGTCGGTGTTCCATGCGGGCGCATACAAAGGCGTCTGATGTCCCAAATC 50395 ||||| |||| | || ||||| || ||||| ||||| ||||| |||||||| | | Sbjct 182236 TGTGTAAGTTTCCTTGGGATTCCACGCTGGCGCGTACAATGGCGTTTGATGTCCAAGAGT 182295 Query 50396 GACGGTGGACCAAGCGCCTTTAAAATCGTAACTCATTAAAAATATTTTATCTAAATAATT 50455 | | | ||||| || || || || ||||||||||| || || || | ||| | |||||| Sbjct 182296 GTCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATT 182355 Query 50456 TTGAGCGTCGCCGTAATTGACAAGGGCGATTTTATCGTAACCTGCGCTAACGGCGCTCGT 50515 |||||| | ||| || | |||| ||||||||| | || ||||||| || || Sbjct 182356 TTGAGCCTTGCCATAGTCTACAACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGT 182415 Query 50516 CAATTCGAATTCGCGGCCGGTGACGCGTTGA-AGATCGTCCAGCATGTCGCGCAGATCGC 50574 |||||| ||| || | | ||| || ||||| ||||| || || | || Sbjct 182416 TAATTCGTATTTCTTACCATTCTTA-GCTGAGAGCTCGTCGAGCATCTCACGTAATTCTT 182474 Query 50575 GAAGCAGCACAACGTACGTGAGT----CCGTCTTTGTGAGGATCGCCGACTGCGGGATTG 50630 | || ||| ||| | | || |||| || || | |||| | || || Sbjct 182475 TCATCA----AACTTACATAACAATCACCATCTTC-TG-GGCTA-CCGAGGTCAGGGTTA 182527 Query 50631 GCGCCGTTGCCGCCGGGAAACTCCCAATCGATGTCGACGCCGTCGAAAAACTTCCAAGTC 50690 || || ||||| || || |||||||||||||| || || || ||||| || ||||| || Sbjct 182528 GCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTT 182587 Query 50691 AGCAGAAACTCGCGTACCGATTCCACAAAAACGGCTCGTTTT-TCCGCGTCGTG-CATGT 50748 || |||||||| ||| || | |||||| |||| || || | || || | Sbjct 182588 AGAAGAAACTCCTTTACTGACTGCACAAA------TCGTGTTCTCTTAGATTTGTCAACT 182641 Query 50749 GAAAA----AATGGATCGGACAACGTCCATCCGCCTATAGACGGTAACACCTTGAGGTGC 50804 |||| || ||||||| | |||||| || || ||||| || | | ||| | | Sbjct 182642 AAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCA 182701 Query 50805 GGGTTGGCtttttttATCGCCATCAGTTGACCGAAATTTCCTTTGTACGGTTCGTTCCAA 50864 ||| ||||| ||||| | ||| | ||| || || || |||||||| || |||||||| Sbjct 182702 GGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAAGGCTCGTTCCAT 182761 Query 50865 GCCGAGACGCCCTTTTGTGGTTTCTGTACCGCAGCCCACGGGTCGTGAATGGACACTTTA 50924 | || | || ||||||||||| |||| || ||||| || ||||| || || ||||| Sbjct 182762 GAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTG 182821 Query 50925 AAATCGGCTCGGCCGGCGCACGAACGCTGCAGCGCCTCGAAACTGCCCGTGA-CGGTTTT 50983 || || | |||||| || || ||||| || || | ||||||||| || | |||| Sbjct 182822 AAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTT 182881 Query 50984 CAACGCGTCGTTGACGCCTTCGCCGCCGCAAATCGGCACGAAACCGTACAGCAAATG 51040 ||| || |||| ||| || ||||||||||| || | || ||||| |||||||| Sbjct 182882 AAAC-TATCATTGATGCCGTCACCGCCGCAAATTGGGATAAAGCCGTAGAGCAAATG 182937 >seq3345 Length=207354 Score = 230 bits (254), Expect = 2e-55 Identities = 882/1381 (64%), Gaps = 8/1381 (1%) Strand=Plus/Plus Query 123303 GCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAAC 123362 ||||| ||| |||| || ||||| | || | | || || || ||||||| ||| Sbjct 112020 GCGATTTATTTAGAGCCTTGGCATGCAGACATATTTGAATTCTTGGATTTAAAGAAGAAC 112079 Query 123363 ATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTG 123422 | ||| |||||||| || ||| | || |||| || || |||||| |||| ||| || Sbjct 112080 ACGGGTAAGGAAGAAATGAGAGCTAGAGAACTGTTTTATGCCTTATGGATACCAGATCTG 112139 Query 123423 TTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCC 123482 |||||| | | ||| || | || | || ||| ||||||||||| || ||||| Sbjct 112140 TTTATGAAAAGAGTAGAAAAGGATGAAGTTTGGAGTCTCATGTGTCCTCATGATTGTCCT 112199 Query 123483 GGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAA 123542 ||| | ||| | || | | ||||| || | || || |||| || ||| Sbjct 112200 GGCCTCGCTGACTGCTTTGGAGAGGAATTTGAAGAACTATATGCCAAATATGAA---GAA 112256 Query 123543 GGCAAACAGGTTAGT---CAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACA 123599 | |||| ||| || || || | || || | || | ||||| ||| | Sbjct 112257 GAAAAACGATTTATAAAACAAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATAGAAGCC 112316 Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||||| || || || || || |||||| | || || || || || ||||| || | ||| Sbjct 112317 CAAGTAGAGACTGGTACACCATACATGTTGTATAAGGATGCTTGTAACAGAAAGAGTAAT 112376 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | || | || || || |||||||| ||||||||| | || || | |||||| Sbjct 112377 CAAAAAAATCTTGGCACTATTAAATGTAGCAATCTTTGCACTGAGGTTGTGCAATACACT 112436 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAA 123779 | ||| ||||||| ||||| || | ||||| || | || | || ||| Sbjct 112437 TCAGAAGATGAAGTGGCAGTGTGCAACCTTGCTTCCATAGCACTTAACATGTTTGTTGAA 112496 Query 123780 AACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTG 123839 || |||||||| ||| | ||| || ||||| | |||| | ||||| Sbjct 112497 AATAATAGATTTAATTTTAAAAAATTAAAAGAAATCACAAAGATTGTAACTCAAAATTTA 112556 Query 123840 AACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAA 123899 |||||| |||| |||||||||||||||||| | ||||| || ||| ||| | Sbjct 112557 AACAAAGTTATTGATGTTAATTTTTATCCTGTCCCTGAAGCAAAAACTTCAAATATGAGA 112616 Query 123900 CACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATG 123959 || ||||| | || | || |||| || |||| || |||||||| || || | || Sbjct 112617 CATAGACCTATTGGTATTGGTGTTCAGGGCATGGCAGATGCGTTTGTGTTGATGAGAATT 112676 Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTAC 124019 | |||||||| || |||||| | || ||| |||||| |||||||||||||| Sbjct 112677 TCTTACGAAAGTGAGAAAGCAATACTTCTCAATCAACAAATATTTGAAACAATTTATTAT 112736 Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079 || || || || || || || ||| | || ||| | || || ||| | || Sbjct 112737 GGTGCATTAGAAGCTAGTTGTGAATTAGCTGAAAAAGAAGGTGCATACAGCACATATCAA 112796 Query 124080 GGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAAT 124139 || || || || |||| |||||| | ||||| || |||||| | || || ||| | Sbjct 112797 GGGAGTCCAGCAAGCCAAGGTATCCTCCAGTATGATATGTGGGACAAAACTCCTACAGAC 112856 Query 124140 TTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTG 124199 | ||||||||| | | ||| || ||| | | || |||||||| || || || Sbjct 112857 CTTTGGGACTGGGCTGCCCTCAAAGAAAAGATAGCAAAACATGGTTTGCGCAATTCTCTA 112916 Query 124200 TTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTC 124259 ||| | || |||||||| || | ||||| |||||| | || |||| ||||| || Sbjct 112917 TTGATAGCTCCAATGCCGACTGCCTCTACTGCACAAATTCTTGGCAACACTGAATCTTTT 112976 Query 124260 GAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATA 124319 || || || || ||| | ||| || |||| ||| | || || |||| || | Sbjct 112977 GAACCCTTTACATCAAATATTTACCAAAGAAGAGTCTTATCTGGAGAATTTCCTGTAGTG 113036 Query 124320 AATCATCATTTGGTGGACGACTTG-GTGGCGTTAAATTTGTACGATGAAAACATGCGCAA 124378 || |||||| | || || ||| | | | | |||||| |||||| | ||| || Sbjct 113037 AACCATCATCTTCTGACTGATTTGACTCGGGCT-GATTTGTGGGATGAAGATATGAAAAA 113095 Query 124379 CGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTCAA 124438 ||||| | ||| | || || | ||||| || | | | Sbjct 113096 TCTTATTATATACAACAATGGATCTATACAAGAAATTGAAAAAATTCCTAAAGAAATAAG 113155 Query 124439 GCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGAAATGGCCGTCGA 124498 | ||||||||||||| ||||| || | ||| || || | ||||| | || Sbjct 113156 AGATTTGTACAAAACCGTATGGGAGATTTCACTGAAAACATCCATACAGATGGCAGCTGA 113215 Query 124499 CCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCACCTA 124558 |||| || | | || |||||||||||||||||| | ||| || |||| | ||| Sbjct 113216 TAGAGGAGCTTTTATAGACCAAAGTCAATCTTTTAACATACATGTTGCTAAACCTAACTA 113275 Query 124559 CGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGGCATGTA 124618 | | || || || | ||||| |||| | || | ||||| || ||||| Sbjct 113276 TGGAAAACTTACGTCGATTCATTTCCACGCTTGGAAAATGGGTTTAAAAACAGGAATGTA 113335 Query 124619 TTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAAATCTAAACT 124678 |||||| | || ||||| || || |||| ||||| ||||| || |||||| |||| | Sbjct 113336 CTACTTACGCACAAAACCAGCAGCAAATGCTATTCAGTTTACTGTAGACAAAGGTAAAAT 113395 Query 124679 A 124679 | Sbjct 113396 A 113396 >seq3424 Length=494560 Score = 131 bits (144), Expect = 2e-25 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || | ||| |||| ||||| || || ||||| ||||||||||| || Sbjct 290208 ATTCCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCC 290149 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| |||| ||| ||||| ||| | |||| || ||| || || | Sbjct 290148 --GACAATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTG 290091 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || |||||||| ||| || | ||||| ||||| |||| || Sbjct 290090 GAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCTATTGTGTCAGAAGCCT 290031 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| | |||| |||||||| || | ||||| ||||||||||||||| Sbjct 290030 CCACTTCCAAGGTAATAGTTTTGCCAGTCAATGTTTTCACAAAAATTTGCATC 289978 Score = 129 bits (142), Expect = 5e-25 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || | || ||| | |||| || ||||||||||| ||||||||||| Sbjct 289296 ATTCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATC- 289238 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| || | | ||| |||| ||||||||||| | || | | || ||||| | Sbjct 289237 -TGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAG 289179 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | |||||||||||||| |||||||||||| || | ||||| || || |||| || Sbjct 289178 GAGGAATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCT 289119 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | || | |||||||| || || || |||||||| |||||||| Sbjct 289118 CCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 289067 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--A 45185 ||| |||| ||||| || || ||||| ||||||||||| || ||| | | | | Sbjct 290419 CAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCC--GACAATGTGCGTCCA 290362 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||| ||||| ||| | |||| || ||| || || || ||||||||||| ||| Sbjct 290361 TCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTA 290302 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| ||| || | ||||| || || |||| || || || | ||| | Sbjct 290301 TCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACCTCCAAAGTGATA 290242 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || ||||||||||||||||| Sbjct 290241 GTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 290207 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || || || || || ||||| || ||||||||||| || ||| | | | ||| | Sbjct 290643 ACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTC--TGATAATGTGCGCCCATCTT 290586 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| ||| ||||| ||| | |||| || ||| || || || ||||||||||| ||||||| Sbjct 290585 CCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTATCTT 290526 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||| ||| || | ||||| || || |||| || ||||| | ||| | |||| Sbjct 290525 GAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTT 290466 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || ||||||||||||||||| Sbjct 290465 TCCCAGTCAGTGTCTTTACAAAAATTTGCAT 290435 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || | || |||| |||| || |||||||| ||||||||||| | Sbjct 288840 ATTCCACCCCTTAGACGTAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGT-- 288783 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| || | | ||| |||||||| ||||| ||| | || | || ||| || || | Sbjct 288782 CTGAGAGTGTGCGCCCATCTTCCAATTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTG 288723 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || |||||||| || |||||||| ||| || | ||| | || || |||| | Sbjct 288722 GAGGGATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTT 288663 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | || | ||||| || |||| ||||||||| || |||||||| Sbjct 288662 CCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 288611 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | |||| || || || |||| ||||||||||| || ||||| || || Sbjct 289524 ATTCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCA 289465 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || || | | ||| || | || ||||| || | || | || |||||| || | Sbjct 289464 --GATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTG 289407 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || |||||||| |||||||| || | ||| | || || |||| | Sbjct 289406 GGGGAATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTT 289347 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | ||| | || ||||| || || || ||||||||||||||||| Sbjct 289346 CCACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 289295 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | |||| | ||||| |||| || ||||| || || || || ||||| Sbjct 289068 ATTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCA 289009 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || || | | ||| || | || ||||| || | || | || |||||| || | Sbjct 289008 --GATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTG 288951 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || |||||||| |||||||| ||| | ||| | || || |||| || Sbjct 288950 GGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGCT 288891 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | ||| | || ||||| || || || ||||| ||||||||||| Sbjct 288890 CAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCAT 288839 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||| ||| | || ||||| || || ||||| || || ||| || | | ||| | Sbjct 289959 ACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTC--TGATAGTGTACGTCCATCCT 289902 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | ||| ||||| || | || | | ||| ||||| || ||||||||||| ||||||| Sbjct 289901 CAAGTTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTT 289842 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| || | ||| | ||||| || | ||| ||||| || || | || | Sbjct 289841 GAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCT 289782 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || || || ||||| |||||||| Sbjct 289781 TGCCAGTCAGTGTCTTCACAAATATTTGCAT 289751 >seq1305 Length=286731 Score = 127 bits (140), Expect = 2e-24 Identities = 180/250 (72%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | | ||| ||||||| || ||||||||||| || || || || | Sbjct 24758 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCA--G 24815 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| || | |||||| || || | ||||| ||||||||||| || | Sbjct 24816 ACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTG 24875 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| ||||| |||||||| ||||| ||| | ||||| || ||||| | ||| | Sbjct 24876 GAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTCCA 24935 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC--C 45349 | ||||| |||| ||||| || || || || || || ||||||||||| | | ||| Sbjct 24936 CCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTGAGACTGT 24995 Query 45350 AATTTAATAA 45359 ||| |||||| Sbjct 24996 AATATAATAA 25005 >seq2787 Length=76071 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | ||| || | || || || ||||| ||||| |||||||| || Sbjct 39736 ATTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCA 39677 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || |||||||| ||||| ||| | ||||| ||||| || || || Sbjct 39676 GAAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGA 39617 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || ||||||||||| ||| | ||| | || ||||||| || Sbjct 39616 GGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCA 39557 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 39556 ACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 39507 Score = 111 bits (122), Expect = 1e-19 Identities = 159/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||| |||| || ||||| |||||||| || || || ||| || | || ||| | Sbjct 40171 ACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCA--GACAGTGTACGACCATCTT 40114 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | ||||| || || || | || | ||||| || ||||| |||||||||||||| |||| Sbjct 40113 CTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTT 40054 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | ||||| ||| | ||| | ||||| |||| || ||||| | ||||| |||| Sbjct 40053 GGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTT 39994 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 | || || || ||||| ||||| |||||||| ||| || || Sbjct 39993 TTCCAGTGAGTGTTTTAACAAAGATTTGCATACCGCCACGAA 39952 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | || || || || || || |||||||| || || Sbjct 41104 ATACCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCA 41045 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| |||||| || ||| | || | ||||| || || || Sbjct 41044 GACAGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGA 40985 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||||||||| || ||| | ||| | |||||| || | ||| Sbjct 40984 GGAATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCA 40925 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||| || || || ||||| ||||| |||||||| Sbjct 40924 ACTTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCAT 40875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||| ||| |||| ||| || || ||||||||||| ||||||||||| Sbjct 39964 ATACCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCA 39905 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | ||||||||| || | || | | || || || || Sbjct 39904 GATAATGTACGGCCATCTTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGG 39845 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| ||||| || ||| || | ||| | |||||||| | ||| Sbjct 39844 GGAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCT 39785 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | ||||| || || ||||| || ||||| || ||||| Sbjct 39784 ACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 39735 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || |||| ||| || || || || |||||||| || || || Sbjct 40648 ATACCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCA 40589 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || || | || | ||||| || || || Sbjct 40588 GACAGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGG 40529 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || |||||||||||||| || || | ||| | |||||| || | ||| Sbjct 40528 GGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCC 40469 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || ||||| ||||| || || ||||| |||||||| Sbjct 40468 ACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 40419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451978853977640