Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_012959.1 Length=34920 Score E Sequences producing significant alignments: (Bits) Value seq3063 417 2e-112 >seq3063 Length=7092 Score = 417 bits (462), Expect = 2e-112 Identities = 345/421 (82%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 10960 GGTGACGGCCTACGAGCAGACGGTGAAACAGGAGCGCAACTTCCAAAAGAGTTTCAACAA 11019 ||| || || ||||||||||||||||| |||||| ||||| ||||| || || ||||| Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731 Query 11020 CCACGTGCGCACCCTGATTGCGCGCGAGGAGGTGGCCCTGGGCCTGATGCACCTATGGGA 11079 |||||||||||| || | ||||||||||||||||| | || |||||||| || ||||| Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791 Query 11080 CCTGGCGGAGGCCATCGTGCAAAACCCGGACAGCAAGCCTCTGACGGCGCAGCTGTTCCT 11139 | | | || | | ||||||||| | |||||||| || | ||||||||||||||| Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851 Query 11140 GGTGGTGCAGCACAGCAGGGACAACGAGGCGTTTAGGGAGGCGCTGCTAAACATTGCCGA 11199 | |||||||||||||||||||||||||| || ||||| |||||||||||||| | || Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911 Query 11200 GCCCGAGGGTCGCTGGCTGCTGGAGCTGATTAACATCTTGCAGAGCATCGTAGTGCAGGA 11259 ||||||||| ||||||||||| || |||| ||||| |||||||||| || |||||||| Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971 Query 11260 GCGCAGCCTGAGCCTGGCCGAGAAGGTGGCGGCGATCAACTACTCAGTGCTGAGCCTGGG 11319 ||||||| |||||||||| || |||||||| || || ||||| || |||| || ||||| Sbjct 6972 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 7031 Query 11320 CAAGTTTTACGCGCGCAAGATTTACAAGACGCCGTACGTGCCCATAGACAAAGAGGTGAA 11379 |||||||||||| |||||||| ||| | || || ||||| ||||||||||| ||||| || Sbjct 7032 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091 Query 11380 G 11380 | Sbjct 7092 G 7092 Score = 136 bits (150), Expect = 9e-28 Identities = 274/405 (68%), Gaps = 30/405 (7%) Strand=Plus/Plus Query 15642 ATGTCAAAGCGCAAAATCAAGGAGGAGATGCTCCAGGTCGTCGCCCCGGAGATTTACGGA 15701 ||||| |||||||||||||| || ||||||||||||||| |||| |||||||| || || Sbjct 618 ATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAGGTCATCGCGCCGGAGATCTATGGC 677 Query 15702 CCCCCGGCG------GACCAG------AAACCCCGCAAAATCAAACGGGTTaaaaa---- 15745 |||||| | || ||| || ||||| || | || ||||| ||||| Sbjct 678 CCCCCGAAGAAGGAAGAGCAGGATTACAAGCCCCGAAAGCTAAAGCGGGTCAAAAAGAAA 737 Query 15746 ---aaaG--GATGAGG-TGGGC--GAGGGGGCAGTAGAGTTTGTGCGCGAGTTTGCTCCG 15797 |||| ||||| | || | || | | || || | ||| || || || Sbjct 738 AAGAAAGATGATGATGATGAACTTGACGACGAGGTGGAACTGCTGCACGCAACCGCGCCC 797 Query 15798 CGGCGGCGCGTAAATTGGAAGGGGCGCAGGGTGCAGCGCGTGTTGCGGCCCGGCACGGCG 15857 ||||||| ||| | ||||| || || | || || || ||||| |||||||| | Sbjct 798 AGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACGTGTTTTGCGACCCGGCACCACC 857 Query 15858 GTGGTGTTTACGCCCGGCGAGCGGTCCTCGGTCAGGAGCAAGCGTAGCTATGACGAGGTG 15917 || || ||||||||||| ||||| ||| | || |||||| ||||| |||||| Sbjct 858 GTAGTTTTTACGCCCGGTGAGCGCTCCACCCGCACCTACAAGCGCGTGTATGATGAGGTG 917 Query 15918 TACGGCGACAACGACATCCTGGACCAGGCGGCGGAGCGGGCGGGCGAGTTCGCCTACGGG 15977 ||||||||| | ||| | || || ||||| ||||| || ||||| |||||||| Sbjct 918 TACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCGCCTCGGGGAGTTTGCCTACGGA 977 Query 15978 AAGCGGTCGCGCGAAGAGGAGCTGATCTCGCTGCCGCTGGACGAG 16022 |||||| | |||| || | || |||||||||||||| Sbjct 978 AAGCGG------CATAAGGACATGTTGGCGTTGCCGCTGGACGAG 1016 Score = 109 bits (120), Expect = 1e-19 Identities = 129/178 (72%), Gaps = 15/178 (8%) Strand=Plus/Plus Query 15070 CCCAGCACCATGTACGGAGGAGCCAAGAAGCGCTCCCAACAGCACCCCGTTCGCGTCCGC 15129 || |||| |||| || || || |||||||||||| | || ||||| || ||||| ||| Sbjct 3 CCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGC 62 Query 15130 GGCCACTTTCGCGCTCCCTGGGGCGCTTACAAGCGCGGGCGGACCTCTGCCCCCGCCGCC 15189 || |||| ||||| ||||||||||| |||| ||||| || | | Sbjct 63 GGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCG---------------CACT 107 Query 15190 GTGCGCACCACCGTCGACGACGTCATTGACTCCGTAGTCGCTGACGCGCGCAACTACA 15247 | ||||||||||||||| |||| ||||||| | || || | || ||||||||||||| Sbjct 108 GGGCGCACCACCGTCGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACA 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111616688351556