Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3345 114 2e-20 >seq3345 Length=207354 Score = 114 bits (126), Expect = 2e-20 Identities = 254/380 (67%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 116235 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 ||| | ||| |||| || | || || ||||| | ||||| || | |||||||||||| Sbjct 112667 CAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTCTATGTCTCATATT 112608 Query 116295 AGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 || || || || ||||||||||| ||| ||||| | |||| ||||| Sbjct 112607 TGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACTTTGTTTAAATTTTG 112548 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 116414 || |||| |||||||||||| | | |||| ||| ||| || | | | |||| Sbjct 112547 AGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCT---ATTATTTTCA-- 112493 Query 116415 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474 ||| || | ||| || || || || || || ||||| | ||||| | ||| Sbjct 112492 -ACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGT 112434 Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 ||| | | || || || || | ||| || ||||| ||||| | || |||||||| Sbjct 112433 GTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATT 112374 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 |||| ||||||| |||||||| || | ||| ||||| || || ||||| ||||| Sbjct 112373 ACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCTACTTGGGC 112314 Query 116595 CTTGAGAATAGCCTTCCATA 116614 | | ||| | |||||||| Sbjct 112313 TTCTATAATTGACTTCCATA 112294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613474154968440