Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3463 179 4e-40 seq3424 105 8e-18 seq2787 98.7 1e-15 >seq3463 Length=282612 Score = 179 bits (198), Expect = 4e-40 Identities = 640/990 (65%), Gaps = 33/990 (3%) Strand=Plus/Minus Query 98734 AAAGTTACGGGGGCTTATTTTGTAGAATGGGGTGTTTACGATCGCAAATTTCCAGCAGAT 98793 |||||| ||| || || || |||||||||||||| || | | ||||| || | ||| Sbjct 183021 AAAGTTGTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGAT 182962 Query 98794 AAAGTGCCTATCCCCAATTTGACACACCTTTTGTATGGTTTTATCCCCATTTGCGGAGGC 98853 | ||||| || ||| | || || | | || || |||||||| |||||||| || Sbjct 182961 CGTATACCTATACCTAATCTTACTCATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGT 182902 Query 98854 GACGGTATAAACGACAGTCTAAAACAAGTGCCGGGATCTTTTGAGACGTTACAAAAATCG 98913 ||||| || || || ||| ||||| | | || ||| | | |||| || Sbjct 182901 GACGGCATCAATGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCC 182842 Query 98914 TGCGATAAGAGAGATGATTTCAAGGTGAGCATCCACGATATTTACGGTGCTCTACAGAAA 98973 || | || || ||||| || ||||||||| | | || |||| ||| Sbjct 182841 TGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAA 182782 Query 98974 CCACAACAGGG--TGTCTCCGATTATAACGAGCCTTACCGTGGCAATTTCGGACAGCTTA 99031 |||||| | || ||||| | | |||||||||||| ||||| || || || | | Sbjct 182781 CCACAAAAAGGATTGTCTTCA--TGGAACGAGCCTTACAAAGGCAACTTTGGCCAATTAA 182724 Query 99032 TGGCCATACGTAAACA---CAACCCACATCTAAAAATCCTACCCAGTATCGGTGGTTGGA 99088 || | || ||||| | ||| | | || || || ||| ||| ||||| |||| Sbjct 182723 TGTCACTA---AAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGA 182667 Query 99089 CTCTTAGCGACCCCTTCTATTTTTTCGCCGATGATTACAAGCGCAAAGTGTTCGTAGACT 99148 | ||| ||| || |||| ||||| | || | | ||| | | | || || | | Sbjct 182666 CGCTTGCCGATCCTTTCTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAGT 182607 Query 99149 CGGTTCGTGAATTCCTACAGGTGTGGAAATTTTTCGACGGTGTAGACATCGACTGGGAGT 99208 | || || || || | |||||||| ||||| ||||| || ||||| ||||||| Sbjct 182606 CAGTAAAGGAGTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGT 182547 Query 99209 TTCCTGGCGGAAAGGGGGCCAACCCTGAAGTAGGAAATCCTAATGAGGACGGAAACACTT 99268 | ||||| || || || || |||||||| | || | || || || || | || Sbjct 182546 TCCCTGGTGGCAAAGGTGCTAACCCTGACCTCGGTAGCCCA---GAAGATGGTGATTGTT 182490 Query 99269 ATGTCACACTTCTGCAAGAGCTTCGTTTGATGCTTGACGAATTGGGTGTG-GCCAATAAA 99327 |||| | | || |||| | ||| |||||| ||||| | | | || || || Sbjct 182489 ATGTAAGTTTGATGAAAGAATTACGTGAGATGCTCGACGA----GCTCTCAGCTAAGAAT 182434 Query 99328 CGTGTT---TACGAACTGACAAGTGCCGTGGGCGCCGGTTACGATAAAATCGACGTGGTC 99384 || |||||| | || ||| | |||| || | ||||||||| | || || Sbjct 182433 GGTAAGAAATACGAATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTA 182374 Query 99385 GATTACTCTACAGCCAG--TCAATATT---TGGACCATGTGTTTTTAATGAGTTACGATT 99439 || ||| || || |||| ||| |||| ||| | || || ||||||||||| | Sbjct 182373 GA-----CTATGGCAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACT 182319 Query 99440 TTAAAGGCGCCTGGTCCAACACCGACT-TGGGTCATCAAACACCATTGTATGCACCATCG 99498 | || || |||||||| || | ||| | || |||||||| |||||||| || ||| || Sbjct 182318 TCAAGGGAGCCTGGTCAAATGAC-ACTCTTGGACATCAAACGCCATTGTACGCGCCAGCG 182260 Query 99499 TGGAACTCCGAAGAGAGATACACAACCGATTATGCGGTTAAACAGCTATTAAAGAAAAAA 99558 ||||| || | || | |||||| | || | | || ||| | | | | | | Sbjct 182259 TGGAATCCCAAGGAAACTTACACATCTGACTTCGGAGTAAAATACTTGCTGGCGCAGGGA 182200 Query 99559 GTGCCTTCTCACAAGATTGTAGTGGGAGTCGCCATGTACGGCAGAGGATGGAGTGGAGTG 99618 ||| | || | ||||||||||| || || || ||||| || | || |||| ||| || Sbjct 182199 GTGAATCCTAAGAAGATTGTAGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGTT 182140 Query 99619 CATGACTACAAAAATAATAACGTTTTTACGGGTGTGGCCACGGGACCGGTAAAAGGCACC 99678 ||||| |||||| | || | || || || || || ||||| || ||||| || Sbjct 182139 CATGATTACAAAGACAACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACT 182080 Query 99679 TGGGAAAACGGTGTTGTTGATTATAGGCAG 99708 ||| || |||| || ||||| |||||| || Sbjct 182079 TGGCAAGACGGAGTGGTTGACTATAGGGAG 182050 >seq3424 Length=494560 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| ||||||||||| ||| ||||| || ||||||||||| ||| Sbjct 289749 CCACCTCTCAGCCGCAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAT 289690 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||| || || || || | | ||||| || | || Sbjct 289689 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 289630 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| || ||| || ||| ||| | | | | || || | |||||| Sbjct 289629 ATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 289570 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||| || ||||| ||||| || || ||||| ||||||||| Sbjct 289569 TCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289522 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| ||||| ||||| || ||||| || ||||||||||| ||| Sbjct 289521 CCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGAT 289462 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||| || || || || | | ||||| || | || Sbjct 289461 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 289402 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| || ||| || ||| ||| | | | | || || | |||||| Sbjct 289401 ATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 289342 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||| || ||||| ||||| || || ||||| ||||||||| Sbjct 289341 TCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 289294 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || |||| ||| || || | ||||| ||| ||||| |||||||| ||||| || Sbjct 288837 CCACCCCTTAGACGTAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAG 288778 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || | ||||| |||||||| || | | || || || | || Sbjct 288777 AGTGTGCGCCCATCTTCCAATTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGG 288718 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| ||||| ||| | | | | || || | |||||| Sbjct 288717 ATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACT 288658 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || || | ||||| || ||||||||||| Sbjct 288657 TCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 288611 >seq2787 Length=76071 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| |||||| || || | ||||| || ||| || || ||||||||||| || Sbjct 41329 CCTCCTCGTAAACGTAATACTAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAA 41270 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| ||| | || || ||||||||||| ||||| || | || || || || | || Sbjct 41269 AGAGTACGCCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 41210 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| ||||| |||||| || | | | | ||||| | ||| || Sbjct 41209 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 41150 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| ||||| || ||||| || || |||||||| ||||| Sbjct 41149 TCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 41103 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 46390 ATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTG 46449 |||||| ||| || |||||||| || ||||| || |||||||| | || || | ||| Sbjct 41534 ATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCTAACTG 41475 Query 46450 CTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 || || || || || | ||||| ||||| | || | || |||||| || |||||| Sbjct 41474 TTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTT 41415 Query 46510 CTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 ||| | | | | |||||| | ||||| |||| |||||||| || || || Sbjct 41414 AGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGT 41355 Query 46570 CAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||||||||| ||||| Sbjct 41354 AAGAGTCTTAACAAAGATCTGCAT 41331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565207954846680