Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq3463 239 3e-58
seq2787 113 3e-20
seq3424 95.1 8e-15
>seq3463
Length=282612
Score = 239 bits (264), Expect = 3e-58
Identities = 851/1307 (65%), Gaps = 46/1307 (4%)
Strand=Plus/Plus
Query 5817 TTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCAC 5876
|| || | ||| ||||||| ||||| | || |||||||| || ||||| | ||||||
Sbjct 181820 TTACCGAGACCCATGTTCATGGCATTCAGTAGGTCACCGTTATCAGCGTCCACTTCCCAA 181879
Query 5877 GCAAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGA 5936
||||| | |||||| | || || | |||||| ||||| ||| | | |||||| |
Sbjct 181880 GCAAAGAGACCACCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACCGATCTA 181939
Query 5937 TCGTTGTCGTACGTAACTAAATCATTATT--ATCGT----AGACGTACGGAGATTGTGCA 5990
| || || || || || | ||| | | || || ||||||| || | ||| ||
Sbjct 181940 GCATTATCATAGGTTACAAGATCTCCAGTTGATGGTCTGAAGACGTAAGGGGCTTGGGCG 181999
Query 5991 ATGTTATCATA---GAATTGTACACTTTCGTCGTACCTATTTA-----CAATATCTTTAT 6042
| || || || ||| | ||||| | | | | | |||| |||| || |||
Sbjct 182000 ACATTGTCGTAATGGAACTCC-CACTTGCCTTG-AGCGATTTCATTCGCAATCTCCCTAT 182057
Query 6043 AATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACG 6102
| || | || ||| || ||| || ||||| || || | |||| | ||||| || |
Sbjct 182058 AGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAAGG 182117
Query 6103 GATTATTGTTTTCG-ACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCT 6161
|| | |||| || | | || ||| || || |||| || || ||||||||||| ||||||
Sbjct 182118 GAATGTTGTCTTTGTAATC-ATGAACGCCAGTCCAACCACGACCATACATAGCAACACCT 182176
Query 6162 ACTACTAATTTAGTCGAATCGACATTTTGATTTAACAA-TCTGTTAATAGCAAAATGGGT 6220
||||| | || | | || || || | ||| | | ||| | | || | |
Sbjct 182177 ACTACAATCTTCTTAGGATTCACTCCCTGCGCCAGCAAGTATTTTACTC-CGAAGTCAGA 182235
Query 6221 TGTGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATT 6280
||||||| |||| || | ||||| || ||||| | || |||||| || | | |
Sbjct 182236 TGTGTAAGTTTCCTTGGGATTCCACGCTGGCGCGTACAATGGCGTTTGATGTCCAAGAGT 182295
Query 6281 TTCCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCG 6340
|| | ||||| || || || || ||||| |||| | || |||| ||| | |||
Sbjct 182296 GTCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATT 182355
Query 6341 TTGCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGT 6400
||| || | ||| || ||||| | |||||| || | || || | ||||| |||
Sbjct 182356 TTGAGCCTTGCCATAGTCTACAACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGT 182415
Query 6401 TAGTTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTT 6460
|| || || ||||| |||| | | | || |||||| || ||||| || ||
Sbjct 182416 TAATTCGTATTTCTTACCATTCTTAGCTGAGAGCTCGTCGAGCATCTCACGTAATTCTTT 182475
Query 6461 TAAAAGTATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACC 6520
| | || ||| | | ||| ||| | | || || ||||| |||||
Sbjct 182476 CATCAAACTTACATAACAATCACCATCTTCTGG---GCTACCGAGGTCAGGGTTAGCACC 182532
Query 6521 TTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAA 6580
||| || || || ||||||||||| || || || || ||||| |||||||| ||| |
Sbjct 182533 TTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAG 182592
Query 6581 AAATTCGCGCACACTATCAACAAA-CGTATTTCGTTTTTCGAC--GTCGTTTAACTGGTA 6637
||| || || | ||||| ||| || | || || ||| ||| | |
Sbjct 182593 AAACTCCTTTACTGACTGCACAAATCGTGTTC---TCTTAGATTTGTCAACTAAAAAGAA 182649
Query 6638 AAACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTG 6697
|| |||||| ||||||||| || || || || || | || | || || || | |
Sbjct 182650 GAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGG---GCG 182706
Query 6698 GCGCTTGATC----GCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCT 6753
| ||||| | | |||||| || |||||||| |||||||| || ||||| | |
Sbjct 182707 G-GCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAAGGCTCGTTCCATGAA- 182764
Query 6754 CGACA--CCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAA 6811
|||| ||||||||||||||||| | ||| ||||| ||| || || | ||||||||
Sbjct 182765 -GACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAA 182823
Query 6812 ATCTTTTCGGCCGGCGCACGATTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTT 6870
|| | |||||| || || || | || | |||| || | || | || |
Sbjct 182824 GTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCG-ATCTCTT--T 182880
Query 6871 TAAGCGCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTG 6930
||| | ||| || | || || ||||| |||||||| ||||| ||||| | |||||| |
Sbjct 182881 TAAACT-ATCATTGATGCCGTCACCGCCGCAAATTGGGATAAAGCCGTAGAGCAAATGAG 182939
Query 6931 TAAGATTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCA 6990
|||||||||| || || || || |||| ||| ||| || ||||||||||| |
Sbjct 182940 TAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTA 182999
Query 6991 CAAAGTAAGCGCCCACAACATTATCGGTAATTTTTTCGAACGGTACATTGTTTTCCGACC 7050
| ||||| || |||||||| || | | ||| | |||||| ||| ||||| |
Sbjct 183000 CGAAGTAGGCACCCACAACTTTTCCAGATGTTTGCTTGAACGGCTTATTTTTTTCTCCCA 183059
Query 7051 ACATATATTTTATAGGATTTAAATGCGAACCGTCTGTATCGGCCACG 7097
| |||||| | |||| |||||| || || ||||||||||||
Sbjct 183060 ATGTATATTCCAGAGGAGGTAAATGACTTCCATCGGTATCGGCCACG 183106
>seq2787
Length=76071
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||||| |||||| || | ||| ||||||||| |||||||| || |
Sbjct 39733 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 39674
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | |||| | || |||||||| || || | ||||| ||||| || ||||| | ||
Sbjct 39673 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 39614
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| |||||| ||||| ||||| ||| | | | | || || | ||| ||
Sbjct 39613 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACT 39554
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||||||||| ||||||||||| | ||||| || |||||||||||
Sbjct 39553 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 39507
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| ||||| ||||| || |||||||| ||||||||| || || || || | |
Sbjct 40189 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 40130
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| || |||| || ||||| || || ||||||| | ||| || ||||||| ||
Sbjct 40129 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 40070
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| |||||||||||| ||||| ||| | | | | |||||| | ||| ||
Sbjct 40069 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 40010
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||||||||||||| || || | ||||| || ||||| |||||
Sbjct 40009 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 39963
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| ||||| ||||||||||| ||||||||| || ||||| || | |
Sbjct 41557 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 41498
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | ||| |||| || || ||||| || |||| || | |||||| || || | |||
Sbjct 41497 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 41438
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||| || || || || || ||| || ||| || ||||| | ||||
Sbjct 41437 ATGCCCTCCTTATCTTGGATCTTAGCCTTAACATTTTCGATA--GTGTCGGATGGCTCCA 41380
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||||||| || || || || || | ||| || || |||||||||||
Sbjct 41379 CCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 41331
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| ||||||| ||||||||| | ||| | || || || || || || || || | |
Sbjct 40417 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 40358
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| ||| |||| |||||||| || || |||| || | |||||||||||| | ||
Sbjct 40357 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 40298
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||| |||||||| ||||| ||| | | | | || || | | ||||||
Sbjct 40297 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 40238
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||| ||||| || || || |||| ||||| || || ||||||||
Sbjct 40237 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| ||||| ||||| | ||| || ||||||||| ||||| || ||||| || || |
Sbjct 41329 CCTCCTCGTAAACGTAATACTAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAA 41270
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| | || |||| |||| || || || | ||||| | ||| || ||||| | |||
Sbjct 41269 AGAGTACGCCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 41210
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| || |||||||| || || ||||| | | | ||||||| | ||| ||
Sbjct 41209 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 41150
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || || ||||| || || | || ||||| |||||||||||
Sbjct 41149 TCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 41103
>seq3424
Length=494560
Score = 95.1 bits (104), Expect = 8e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570
|| || |||||||| ||| || || |||||||| || | | ||| |||| |||
Sbjct 288819 ACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAGAGTGTGCGCCCATCTTCC 288760
Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630
||||| || ||| | ||||||| | || ||||| | || | |||||| |||||
Sbjct 288759 AATTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCTTGA 288700
Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690
|| ||| || | | | | ||| || | |||||| ||||| || || |||||
Sbjct 288699 ATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTC 288640
Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
|| |||||||||||||||||||| ||||||
Sbjct 288639 CCAGTTAAAGTTTTTACGAAGATTTGCATG 288610
Score = 95.1 bits (104), Expect = 8e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
||||| ||||| |||||||| ||| ||||| ||||||||||| | || ||| ||
Sbjct 289281 CGCAGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCA 289222
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| |||| ||||| || ||||||| | | ||| || || | || | ||||||||||
Sbjct 289221 TCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTG 289162
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684
|| |||||| |||| | ||| ||| || | ||||| ||||| || ||
Sbjct 289161 TCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATA 289102
Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || || | || ||||| || || |||||
Sbjct 289101 GTTTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 289067
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| | ||||| || ||||||||||| || || || |||||||| || | |
Sbjct 290205 CCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGAC 290146
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| |||| |||| |||| ||| || ||| | ||||| | | || ||||| | ||
Sbjct 290145 AATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 290086
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| |||||| ||||| || ||| |||| | ||| |||||| | |||||
Sbjct 290085 ATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCTATTGTGTCAGAAGCCTCCACT 290026
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| ||||| ||||| || || || ||||| || || || |||||
Sbjct 290025 TCCAAGGTAATAGTTTTGCCAGTCAATGTTTTCACAAAAATTTGCAT 289979
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| |||| | ||||| || ||||||||||| || || || |||||||| || |
Sbjct 290434 GCCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGA 290375
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| |||| |||| |||| ||| || ||| | ||||| | | || ||||| | ||
Sbjct 290374 CAATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGG 290315
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| |||||| || || || ||| |||| | ||| ||| || | ||||||
Sbjct 290314 AATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 290255
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||||||| || ||||| || || | || ||||| || || |||||
Sbjct 290254 CTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 290207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347351357559797
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