Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_015225.1 Length=35499 Score E Sequences producing significant alignments: (Bits) Value seq3063 378 2e-100 >seq3063 Length=7092 Score = 378 bits (418), Expect = 2e-100 Identities = 307/372 (83%), Gaps = 0/372 (0%) Strand=Plus/Plus Query 11062 AGTTTCAACAACCACGTGCGCACGCTGGTGGCGCGCGAGGAGGTGGCCATCGGGCTGATG 11121 || || |||||||||||||||||||| |||||||||||||||||||| || || |||||| Sbjct 6721 AGCTTTAACAACCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATG 6780 Query 11122 CACCTGTGGGACTTTGTGGAGGCGTTCGTGCACAACCCGAGCAGCAAGGCGCTGACGGCG 11181 || |||||||||||||| ||| | | ||| ||||| | |||||| |||| | |||| Sbjct 6781 CATCTGTGGGACTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCG 6840 Query 11182 CAGCTGTTCCTAATCGTGCAGCACAGCCGCGACAACGAGCTGTTTCGCGACGCGCTGCTG 11241 ||||||||||| || |||||||||||| | ||||||||| || | || |||||||| Sbjct 6841 CAGCTGTTCCTTATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTA 6900 Query 11242 AACATCGCCGAGCCCGAGGGCCGGTGGCTGCTGGACCTGATTAACATCCTGCAGAGCATC 11301 ||||| | |||||||||||||| |||||||| || |||| ||||| ||||||||||| Sbjct 6901 AACATAGTAGAGCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATA 6960 Query 11302 GTGGTGCAGGAGCGCTCGCTCAGCCTGGCCGACAAGGTGGCGGCCATCAACTACTCGATG 11361 ||||||||||||||| | |||||||| ||||||||||| ||||| ||||| || ||| Sbjct 6961 GTGGTGCAGGAGCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATG 7020 Query 11362 CTGAGCCTGGGCAAGTTTTACGCGCGCAAAATCTACCGCAGCCCCTACGTGCCCATCGAC 11421 || || ||||||||||||||||| ||||| || |||| | ||| ||||| ||||| ||| Sbjct 7021 CTCAGTCTGGGCAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGAC 7080 Query 11422 AAGGAGGTGAAG 11433 |||||||| ||| Sbjct 7081 AAGGAGGTAAAG 7092 Score = 147 bits (162), Expect = 5e-31 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 15256 AGCAAGATGTACGGGGGCGCCAAACGCCGCTCCAGCGAGCATCCCGTGCGCGTGCGCGGC 15315 |||||||||| || || || || |||||| | | || || |||||||||||||| Sbjct 6 AGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGCGGG 65 Query 15316 CACTACCGCGCGCCCTGGGGGGCCCACAAGCGCGGCCGCACGGGGCGCACCACGGTCGAC 15375 |||||||||||||||||||| || ||||| ||||||||||| ||||||||||| ||||| Sbjct 66 CACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTGGGCGCACCACCGTCGAT 125 Query 15376 GAGGTCATTGACAGCGTGGTGGCCGACGCCGCCAACTACACGCC 15419 || | ||||||| ||||||| || || |||||||||||| Sbjct 126 GACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCC 169 Score = 96.9 bits (106), Expect = 8e-16 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 15631 CGACGAGCGGCCCGTCGC-GCCGCGGCCGCCATCAGCCGCATGTCCCGGGGGCGCCGCGG 15689 |||||||||| ||| ||| || || || ||||| || ||| | | ||| ||| | || Sbjct 417 CGACGAGCGG-CCGCCGCAGCAGCCGCGGCCATTAGTGCTATGACTCAGGGTCGCAGGGG 475 Query 15690 CAACGTGTACTGGGTGCGTGACTCGGTCACCGGCCTGCGCGTACCGGTGCGCTTTCGCCC 15749 |||||||||||||||||| ||||||| |||||||||||| || |||||| ||||| Sbjct 476 CAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCGCACCCGCCC 535 Query 15750 CCCTCGC 15756 ||| ||| Sbjct 536 CCCGCGC 542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113469393544938