Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2787 102 5e-17 seq1305 96.9 2e-15 seq3424 93.3 3e-14 >seq2787 Length=76071 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || |||||| ||||| |||||||| ||||| | ||| | || Sbjct 39719 CAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCGTC 39660 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| || ||||| || || || | ||||| || ||| | || | || |||||||| Sbjct 39659 TTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 39600 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| || ||| || | | || | || | ||||| || | || ||||| Sbjct 39599 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 39540 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| ||||| || || ||||||||||||||||| || Sbjct 39539 TTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 39504 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || || ||||| | ||| ||||||||||| || ||||| ||||| | || |||| Sbjct 41314 AATACTAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAAAGAGTACGCCCATCC 41255 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||||||| || || || || || || ||||| || ||| | || | ||||| ||||| Sbjct 41254 TCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGAATACCCTCTTTGTCT 41195 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||| || | | || | || || ||||| || | || || ||| Sbjct 41194 TGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTT 41135 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || ||||| ||||||||||||||| Sbjct 41134 TTCCCTGTCAGTGTCTTTACAAAGATCTGCATA 41102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || |||||||||||||| || | || |||| || | |||||| || ||||| Sbjct 41522 TTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAA 41463 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || || |||||| | || | |||||||| || ||||| || || Sbjct 41462 GATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTAACATT 41403 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || | ||| || || | || ||||| || || || |||||||| || Sbjct 41402 TTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAAC 41343 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 41342 AAAGATCTGCATA 41330 >seq1305 Length=286731 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| || | |||| ||| || |||||||| ||||| || | | ||| |||| || | Sbjct 24777 CAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTA 24836 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 | ||||| || ||||| || | |||||||||||| | || | || ||||| || | Sbjct 24837 GTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGA 24896 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 | || ||| || | |||| | || |||||| || |||| ||| |||||||| | Sbjct 24897 TTTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTCCACCTCGAGGGTAATGGTTTTAC 24956 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || ||||| || || || ||||| Sbjct 24957 CCGTAAGGGTCTTGACGAAAATTTGCAT 24984 >seq3424 Length=494560 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || || | | |||||| || || | || || ||||| || |||||||||| Sbjct 290207 TTCCACCTCTTAGACGCAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCG 290148 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | | ||| |||| ||||| || |||||||| || || |||| ||| || ||| | | Sbjct 290147 ACAATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAG 290088 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| |||||| || || | |||| | ||| ||||| | Sbjct 290087 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATTTTCTATTGTGTCAGAAGCCTCCA 290028 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| || ||||| || || | || |||||||| || ||||| Sbjct 290027 CTTCCAAGGTAATAGTTTTGCCAGTCAATGTTTTCACAAAAATTTGCAT 289979 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||||||| || || || || | ||| |||| || ||||| ||||| ||||| Sbjct 289030 TTCTTTCTGAATGTTGTAATCAGATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAA 288971 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||| ||| | || | ||||| || || ||| ||| ||| || Sbjct 288970 AATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATT 288911 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| | |||||| || | || || || || || || || ||||| || Sbjct 288910 TTCAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTAC 288851 Query 34970 AAAGATCTGCAT 34981 || || ||||| Sbjct 288850 GAAAATTTGCAT 288839 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| ||||| | | || |||||||| | || ||| || ||||| ||||| || | Sbjct 289295 TTCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTG 289236 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | ||| |||| |||||||||||||| ||||| || || | || ||||| | | Sbjct 289235 ACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAG 289176 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||| || || || | |||| | ||| ||||| | Sbjct 289175 GAATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCA 289116 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || ||||| || || || ||||| ||||| || ||||| Sbjct 289115 CTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 289067 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| || ||||| || || | ||| |||| || || || ||||| ||||| Sbjct 289942 TTCTTTCTGAATATTGTAGTCTGATAGTGTACGTCCATCCTCAAGTTGCTTTCCAGCAAA 289883 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||| |||||| | || | || ||||| || ||| || || || Sbjct 289882 AATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGAATTTTGGCCTTAACATT 289823 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| || |||||| || | || || || || || || || |||||||| Sbjct 289822 TTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTCAC 289763 Query 34970 AAAGATCTGCAT 34981 ||| || ||||| Sbjct 289762 AAATATTTGCAT 289751 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || ||||||||||| | | ||| |||| ||||| || |||||||| || Sbjct 290397 TCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAA 290338 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||| || ||| | || | || ||||| || |||||| || || | Sbjct 290337 ATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTT 290278 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | ||| || || || || | || || ||||| || || || ||||| ||| Sbjct 290277 TCTATTGTATCAGAAGCTTCCACCTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACA 290218 Query 34971 AAGATCTGCAT 34981 || || ||||| Sbjct 290217 AAAATTTGCAT 290207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324616551562152