Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq3345 544 9e-150
seq1351 136 4e-27
>seq3345
Length=207354
Score = 544 bits (602), Expect = 9e-150
Identities = 1193/1788 (67%), Gaps = 25/1788 (1%)
Strand=Plus/Minus
Query 46964 TAATTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATA 47023
|| ||| |||| || |||||||||| ||| | ||| |||| |||||| ||||| ||
Sbjct 113396 TATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTA 113337
Query 47024 ATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGA 47083
||||| || || |||||||| | |||| | | |||||| || || | |||
Sbjct 113336 GTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTCC 113277
Query 47084 ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCT 47143
||| |||||| | || ||| || |||| ||||||||| || || ||||| || |||||
Sbjct 113276 ATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTCT 113217
Query 47144 ATCAGCTGCCATATCTAAAATAACCCTTT--GTGGTATCTCCCATACTGTTTTATAAATT 47201
|||||||||||| | || | ||| ||| ||||||||||| ||||| || |
Sbjct 113216 ATCAGCTGCCATCTGTATGG--ATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAA 113159
Query 47202 TGTTTAATGTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataatt 47258
| | | || |||| || | || | | | ||| |||||||| ||| | ||||||
Sbjct 113158 TCTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 113099
Query 47259 ttgttttttaa---ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGA 47315
||||| | ||||| || || || ||| || | | |||||||
Sbjct 113098 AGATTTTTCATATCTTCATCCCACAAATCAGCCCG---AGTCAAATCAGTCAGAAGATGA 113042
Query 47316 GGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATAT 47375
| || || | ||||||||||||||| ||||| | || ||||| |||| |
Sbjct 113041 TGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAG 112982
Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435
||||| | ||||||| | || |||| |||||| ||||| || || || ||||| | ||
Sbjct 112981 GGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATTGGAGCT 112922
Query 47436 ACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCC 47495
| |||| ||| | | |||| |||| ||||| ||| |||
Sbjct 112921 ATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGGGCAGCCCAGTCC 112862
Query 47496 CAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGA 47555
||||| |||| ||| | ||| | |||||| || || || |||| ||| |||
Sbjct 112861 CAAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGA 112802
Query 47556 GAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAAT 47615
|| | |||||| | || | ||| | | || ||| | ||||||||| ||||| |||
Sbjct 112801 CTCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 112742
Query 47616 GCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTT-CTGATGATTC 47674
|||| |||||| |||||||||||||||| | || ||| |||||| || | |||
Sbjct 112741 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACT-TTC 112683
Query 47675 AAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGG 47734
||| | || | |||||||| || ||||||||||||||||| ||
Sbjct 112682 GTAAGAAATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGG 112623
Query 47735 TCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAAT 47794
|||||| | |||| ||| | ||||| || | ||||| || | ||| ||||
Sbjct 112622 TCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAAC 112563
Query 47795 TTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTT 47854
||| |||| | |||||| ||||||| ||||||| ||| |
Sbjct 112562 TTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCT 112503
Query 47855 GTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATT 47914
|||||| ||||||| | ||||||||||| || || || || || || || || ||||
Sbjct 112502 ATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATC 112443
Query 47915 TGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATT 47974
| ||| ||||| | | |||| || ||||| | |||||| ||||| || | |||
Sbjct 112442 TTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATT 112383
Query 47975 TTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTC 48034
|| |||||| | ||||||| || ||||| || | ||| | ||||| ||||| ||
Sbjct 112382 TTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTC 112323
Query 48035 TATCTGAGATTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCTT 48093
|| || | ||| || || || ||||| | | || | ||| | | | || |
Sbjct 112322 TACTTGGGCTTCTATAATTGACTTCCATA-ACTCTTGAGCTCTGACTTGTTTTATAAATC 112264
Query 48094 TATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTA 48153
|| || | ||| ||||| | ||||| | |||||||| || ||| | | | | |
Sbjct 112263 GTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCAAAGCAGTCAGCGA 112204
Query 48154 ACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCA 48213
|||||||| |||| ||||||||| | |||| | ||||| |||| |||||| |||
Sbjct 112203 GGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTCA 112144
Query 48214 TAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGC 48273
|||| | |||||||||||| | || ||| | || |||| ||| | |||||| || |
Sbjct 112143 TAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTAC 112084
Query 48274 CACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332
| | ||| | ||||| | |||||| || | ||| || |||||||| || ||||||||
Sbjct 112083 CCGTGTTCTTCTTTAAATCCAAGAAT-TCAAATATGTCTGCATGCCAAGGCTCTAAATAA 112025
Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392
|| || | | |||| || ||||| || || |||||||||| |||||||||||||||||||
Sbjct 112024 ATCGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTA 111965
Query 48393 TAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTT 48452
|| ||||| |||||||| || | |||||| || | ||||| || || | || |||
Sbjct 111964 TACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGCCAGCTATGTAAGAA 111905
Query 48453 CCACTAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATT 48509
|| |||||| || || || || || |||||| ||||| || |||||| |||
Sbjct 111904 CCCTGAGCTCTGATGCAATGTGTA--TGTAA-ACCTATGCCACCAGCAGATTTAGAAATT 111848
Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569
| ||||| |||| | |||||| |||| ||||| || ||||| ||| ||||| ||
Sbjct 111847 AATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCATAGCTATA 111788
Query 48570 AGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCA 48629
|| || || || | ||||| | || ||| |||| ||| || ||||
Sbjct 111787 AGGAAGCAGGAGGAAAGCTGCGGCCGCGGTGTGGCTGCTGAGAATAGTGTAGGGCTTGCA 111728
Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCAT 48689
|| |||| |||||||||| | || ||||| || | || || ||| || ||
Sbjct 111727 TGTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTCA 111668
Query 48690 TGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737
||| || ||||| || || | ||| | ||| | |||||| ||||||
Sbjct 111667 CCATGAATGCCTATGGAGACTCTCATAAGCATGTGTTGAGGCCTTTCA 111620
Score = 82.4 bits (90), Expect = 9e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803
|| || ||||| ||||| | ||||||| ||||||| ||||| ||||||||||| ||||||
Sbjct 111269 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAATTGTAT 111210
Query 48804 GAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTT 48853
||| || |||||| || ||| | || | || | | ||||| | |||
Sbjct 111209 TTAAAATCTCTATCATAAACAATAGCAGAGTCTAATTTGTCCTTGTTTTT 111160
>seq1351
Length=825266
Score = 136 bits (150), Expect = 4e-27
Identities = 157/210 (75%), Gaps = 6/210 (3%)
Strand=Plus/Plus
Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292
||||| || || |||||| |||||| |||||||||| |||||| ||||| || |||||
Sbjct 602229 ATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGAAA 602288
Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352
|| || || || || ||||| || | || || || |||| | || ||||| ||
Sbjct 602289 ACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAAAAACGCTCCACCAAGTT 602348
Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412
|||||||| || |||||| ||| ||||| |||||||| ||||| || |||||||||||
Sbjct 602349 CTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTAAAACATGCTTGATAAAATGTTT 602408
Query 19413 TTC---ATCTGAGGTTAATGTATTCCAATC 19439
|| |||| ||||||| | ||||||
Sbjct 602409 CTCACAATCT---TTTAATGTCTCCCAATC 602435
Score = 116 bits (128), Expect = 4e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| || ||| || | ||||||| || || || || |||||||| |||| |||||
Sbjct 601394 CCTCATCCCTAGAAATAAGTTCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 601453
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| ||||| ||||| |||||||| || || || ||||| || || |||||||||||||
Sbjct 601454 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAG 601513
Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162
||| || | ||||||| | |||| || | ||||| | | ||||| || |
Sbjct 601514 CAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTG 601573
Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204
||||||| || |||||||| | || || || | ||| ||||
Sbjct 601574 CCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAATA 601615
Score = 102 bits (112), Expect = 9e-17
Identities = 85/103 (83%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501
||||| ||| ||||| ||||||||||| | |||||||| || || || ||||||||||
Sbjct 602563 TAATACCTTG-GATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTAT 602621
Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
|||| | ||||||||| ||||||| || || |||||||||||
Sbjct 602622 ACATCTGCCATATATCTGGATATTGGATTGGGAATATAACAAA 602664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562078523414760
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