Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3345 544 9e-150 seq1351 136 4e-27 >seq3345 Length=207354 Score = 544 bits (602), Expect = 9e-150 Identities = 1193/1788 (67%), Gaps = 25/1788 (1%) Strand=Plus/Minus Query 46964 TAATTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATA 47023 || ||| |||| || |||||||||| ||| | ||| |||| |||||| ||||| || Sbjct 113396 TATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGTA 113337 Query 47024 ATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGA 47083 ||||| || || |||||||| | |||| | | |||||| || || | ||| Sbjct 113336 GTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTCC 113277 Query 47084 ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCT 47143 ||| |||||| | || ||| || |||| ||||||||| || || ||||| || ||||| Sbjct 113276 ATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTCT 113217 Query 47144 ATCAGCTGCCATATCTAAAATAACCCTTT--GTGGTATCTCCCATACTGTTTTATAAATT 47201 |||||||||||| | || | ||| ||| ||||||||||| ||||| || | Sbjct 113216 ATCAGCTGCCATCTGTATGG--ATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAA 113159 Query 47202 TGTTTAATGTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataatt 47258 | | | || |||| || | || | | | ||| |||||||| ||| | |||||| Sbjct 113158 TCTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 113099 Query 47259 ttgttttttaa---ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGA 47315 ||||| | ||||| || || || ||| || | | ||||||| Sbjct 113098 AGATTTTTCATATCTTCATCCCACAAATCAGCCCG---AGTCAAATCAGTCAGAAGATGA 113042 Query 47316 GGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATAT 47375 | || || | ||||||||||||||| ||||| | || ||||| |||| | Sbjct 113041 TGGTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAG 112982 Query 47376 GGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCA 47435 ||||| | ||||||| | || |||| |||||| ||||| || || || ||||| | || Sbjct 112981 GGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATTGGAGCT 112922 Query 47436 ACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCC 47495 | |||| ||| | | |||| |||| ||||| ||| ||| Sbjct 112921 ATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGGGCAGCCCAGTCC 112862 Query 47496 CAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGA 47555 ||||| |||| ||| | ||| | |||||| || || || |||| ||| ||| Sbjct 112861 CAAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGA 112802 Query 47556 GAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAAT 47615 || | |||||| | || | ||| | | || ||| | ||||||||| ||||| ||| Sbjct 112801 CTCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 112742 Query 47616 GCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTT-CTGATGATTC 47674 |||| |||||| |||||||||||||||| | || ||| |||||| || | ||| Sbjct 112741 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACT-TTC 112683 Query 47675 AAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGG 47734 ||| | || | |||||||| || ||||||||||||||||| || Sbjct 112682 GTAAGAAATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGG 112623 Query 47735 TCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAAT 47794 |||||| | |||| ||| | ||||| || | ||||| || | ||| |||| Sbjct 112622 TCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAAC 112563 Query 47795 TTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTT 47854 ||| |||| | |||||| ||||||| ||||||| ||| | Sbjct 112562 TTTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCT 112503 Query 47855 GTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATT 47914 |||||| ||||||| | ||||||||||| || || || || || || || || |||| Sbjct 112502 ATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATC 112443 Query 47915 TGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATT 47974 | ||| ||||| | | |||| || ||||| | |||||| ||||| || | ||| Sbjct 112442 TTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATT 112383 Query 47975 TTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTC 48034 || |||||| | ||||||| || ||||| || | ||| | ||||| ||||| || Sbjct 112382 TTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTC 112323 Query 48035 TATCTGAGATTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCTT 48093 || || | ||| || || || ||||| | | || | ||| | | | || | Sbjct 112322 TACTTGGGCTTCTATAATTGACTTCCATA-ACTCTTGAGCTCTGACTTGTTTTATAAATC 112264 Query 48094 TATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTA 48153 || || | ||| ||||| | ||||| | |||||||| || ||| | | | | | Sbjct 112263 GTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCAAAGCAGTCAGCGA 112204 Query 48154 ACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCA 48213 |||||||| |||| ||||||||| | |||| | ||||| |||| |||||| ||| Sbjct 112203 GGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTCA 112144 Query 48214 TAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGC 48273 |||| | |||||||||||| | || ||| | || |||| ||| | |||||| || | Sbjct 112143 TAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTAC 112084 Query 48274 CACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 | | ||| | ||||| | |||||| || | ||| || |||||||| || |||||||| Sbjct 112083 CCGTGTTCTTCTTTAAATCCAAGAAT-TCAAATATGTCTGCATGCCAAGGCTCTAAATAA 112025 Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392 || || | | |||| || ||||| || || |||||||||| ||||||||||||||||||| Sbjct 112024 ATCGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTA 111965 Query 48393 TAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTT 48452 || ||||| |||||||| || | |||||| || | ||||| || || | || ||| Sbjct 111964 TACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGCCAGCTATGTAAGAA 111905 Query 48453 CCACTAGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATT 48509 || |||||| || || || || || |||||| ||||| || |||||| ||| Sbjct 111904 CCCTGAGCTCTGATGCAATGTGTA--TGTAA-ACCTATGCCACCAGCAGATTTAGAAATT 111848 Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 | ||||| |||| | |||||| |||| ||||| || ||||| ||| ||||| || Sbjct 111847 AATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCATAGCTATA 111788 Query 48570 AGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCA 48629 || || || || | ||||| | || ||| |||| ||| || |||| Sbjct 111787 AGGAAGCAGGAGGAAAGCTGCGGCCGCGGTGTGGCTGCTGAGAATAGTGTAGGGCTTGCA 111728 Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCAT 48689 || |||| |||||||||| | || ||||| || | || || ||| || || Sbjct 111727 TGTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTCA 111668 Query 48690 TGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 ||| || ||||| || || | ||| | ||| | |||||| |||||| Sbjct 111667 CCATGAATGCCTATGGAGACTCTCATAAGCATGTGTTGAGGCCTTTCA 111620 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 || || ||||| ||||| | ||||||| ||||||| ||||| ||||||||||| |||||| Sbjct 111269 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAATTGTAT 111210 Query 48804 GAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTT 48853 ||| || |||||| || ||| | || | || | | ||||| | ||| Sbjct 111209 TTAAAATCTCTATCATAAACAATAGCAGAGTCTAATTTGTCCTTGTTTTT 111160 >seq1351 Length=825266 Score = 136 bits (150), Expect = 4e-27 Identities = 157/210 (75%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292 ||||| || || |||||| |||||| |||||||||| |||||| ||||| || ||||| Sbjct 602229 ATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGAAA 602288 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 || || || || || ||||| || | || || || |||| | || ||||| || Sbjct 602289 ACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGTGAAAAACGCTCCACCAAGTT 602348 Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412 |||||||| || |||||| ||| ||||| |||||||| ||||| || ||||||||||| Sbjct 602349 CTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTAAAACATGCTTGATAAAATGTTT 602408 Query 19413 TTC---ATCTGAGGTTAATGTATTCCAATC 19439 || |||| ||||||| | |||||| Sbjct 602409 CTCACAATCT---TTTAATGTCTCCCAATC 602435 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || ||| || | ||||||| || || || || |||||||| |||| ||||| Sbjct 601394 CCTCATCCCTAGAAATAAGTTCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 601453 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| ||||| |||||||| || || || ||||| || || ||||||||||||| Sbjct 601454 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAG 601513 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 ||| || | ||||||| | |||| || | ||||| | | ||||| || | Sbjct 601514 CAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTG 601573 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 ||||||| || |||||||| | || || || | ||| |||| Sbjct 601574 CCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAATA 601615 Score = 102 bits (112), Expect = 9e-17 Identities = 85/103 (83%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 ||||| ||| ||||| ||||||||||| | |||||||| || || || |||||||||| Sbjct 602563 TAATACCTTG-GATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTAT 602621 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| | ||||||||| ||||||| || || ||||||||||| Sbjct 602622 ACATCTGCCATATATCTGGATATTGGATTGGGAATATAACAAA 602664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562078523414760