Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_017825.1 Length=36711 Score E Sequences producing significant alignments: (Bits) Value seq3063 367 3e-97 >seq3063 Length=7092 Score = 367 bits (406), Expect = 3e-97 Identities = 334/421 (79%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 11285 GGTCACGGCGTACGAGCAGACCGTGAAGGAGGAGAGCAACTTCCAAAAATCCTTCAACAA 11344 ||| || |||||||||||||| ||||| |||||| ||||| |||||| ||| ||||| Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731 Query 11345 CCACGTGCGCACCCTGATCGCGCGCGAGGAGGTGACCCTGGGCCTGATGCACCTGTGGGA 11404 |||||||||||| || | ||||||||||||||| | | || |||||||| |||||||| Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791 Query 11405 CCTGCTGGAGGCCATCGTGCAGAACCCCACCAGCAAGCCGCTGACGGCGCAGCTGTTCCT 11464 | | | || | | ||| ||||| | ||||||||||| | ||||||||||||||| Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851 Query 11465 GGTGGTGCAGCATAGTCGGGACAACGAGGCGTTCAGGGAGGCGCTGCTGAATATCACCGA 11524 | |||||||| || ||||||||||||| |||||||| |||||||| || || || Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911 Query 11525 GCCCGAGGGCCGCTGGCTCCTGGACCTGGTGAACATTCTGCAGAGCATCGTGGTGCAGGA 11584 |||||||||||||||||| || || || | ||||||||||||||||| ||||||||||| Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971 Query 11585 GCGCGGGCTGCCGCTGTCCGAGAAGCTGGCGGCCATCAACTTCTCGGTGCTGAGTCTGGG 11644 |||| | || ||| | || ||| |||| ||||| |||| || |||| |||||||| Sbjct 6972 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 7031 Query 11645 CAAGTACTACGCTAGGAAGATCTACAAGACCCCGTACGTGCCCATAGACAAGGAGGTGAA 11704 ||||| ||||| | ||||| ||| | ||||| ||||| ||||||||||||||||| || Sbjct 7032 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091 Query 11705 G 11705 | Sbjct 7092 G 7092 Score = 205 bits (226), Expect = 2e-48 Identities = 352/512 (69%), Gaps = 43/512 (8%) Strand=Plus/Plus Query 16000 GGGAACGTGTACTGGGTGCGCGACGCCGCCACCGGTGTGCGCGTGCCCGTGCGCACCCGC 16059 || ||||||||||||||||||||| | | ||| ||||||||||||||||||||||| Sbjct 474 GGCAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCGCACCCGC 533 Query 16060 CCCCCTCGCAC-----TTG-AAGATGTTC--ACTTCG---CGA--TGTTG-ATGTGTCC- 16104 ||||| |||| ||| |||| |||| | || ||||| |||| ||| Sbjct 534 CCCCCGCGCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGTATGTATCCA 593 Query 16105 ----CAGCGGCGAG----GAGG--ATGTCCAAGCGCAAATTCAAGGAAGAGATGCTCCAG 16154 | |||||| | || | ||||||||||||||| |||| ||||||||||||||| Sbjct 594 GCGGCGGCGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAG 653 Query 16155 GTCATCGCGCCTGAGATCTACGGCCCCGCGGTGGTGAAGGAGGA--AAGA----AAGCCC 16208 ||||||||||| |||||||| |||||| || | ||||| || | || |||||| Sbjct 654 GTCATCGCGCCGGAGATCTATGGCCCCCCGAAG---AAGGAAGAGCAGGATTACAAGCCC 710 Query 16209 CGCAAAATCAAGCGGGTCAANNNNNNNNNNNNNNNNNNNNNNNNCGATCT---------G 16259 || || | ||||||||||| || || | Sbjct 711 CGAAAGCTAAAGCGGGTCAAAAAGAAAAAGAAAGATGATGATGATGAACTTGACGACGAG 770 Query 16260 GTGGAGTTTGTGCGCGAGTTCGCCCCCCGGCGGCGCGTGCAGTGGCGCGGGCGGAAAGTG 16319 ||||| | ||| || ||| ||| ||||||| || |||||| || || || Sbjct 771 GTGGAACTGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTA 830 Query 16320 CACCCGGTGCTGAGACCCGGCACCACCGTGGTCTTCACGCCCGGCGAGCGCTCCGGCAGC 16379 | || || |||||||||||||||| || || |||||||| ||||||||| | || Sbjct 831 AGACGTGTTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACCCGC 890 Query 16380 GCTTCCAAGCGCTCCTACGACGAGGTGTACGGGGACGAGGACATCCTCGAGCAGGCGGCC 16439 | | ||||||| || || ||||||||||| ||||||||| | || |||||||| | Sbjct 891 ACCTACAAGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAAC 950 Query 16440 GAGCGCCTGGGCGAGTTTGCTTACGGCAAGCG 16471 |||||||| || |||||||| ||||| ||||| Sbjct 951 GAGCGCCTCGGGGAGTTTGCCTACGGAAAGCG 982 Score = 129 bits (142), Expect = 1e-25 Identities = 137/177 (77%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 15544 CCCAGCAAGATGTACGGAGGCGCTCGCCAACGCTCCACGCAACACCCCGTGCGCGTGCGC 15603 || |||||||||| || || || | |||||| |||||||| |||||||||||| Sbjct 3 CCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGC 62 Query 15604 GGGCACTTCCGCGCTCCCTGGGGCGCCCTCAAGGGCCG-CGTGCGGTCGCGCACCACCGT 15662 ||||||| |||||| ||||||||||| | ||| || | || | | |||||||||||| Sbjct 63 GGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTG-GGCGCACCACCGT 121 Query 15663 CGACGACGTGATCGACCAGGTGGTGGCCGACGCGCGCAACTACA--CCCCCGCCGCC 15717 ||| |||| || ||| |||||||| || ||||||||||||| ||| ||||||| Sbjct 122 CGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCC 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117347595089634