Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3463 255 5e-63 seq3424 109 5e-19 seq2787 109 5e-19 >seq3463 Length=282612 Score = 255 bits (282), Expect = 5e-63 Identities = 838/1286 (65%), Gaps = 32/1286 (2%) Strand=Plus/Plus Query 105818 TGTTCATGGCATTGAGTAAATCGCCGTTATCGGCATCTATTTCCCAAGCAAACAAACCGC 105877 ||||||||||||| |||| || |||||||| || || | |||||||||||| | ||| | Sbjct 181833 TGTTCATGGCATTCAGTAGGTCACCGTTATCAGCGTCCACTTCCCAAGCAAAGAGACCAC 181892 Query 105878 CCAGTTTGTTTCGATCGACATATTTAACCTTGCCCAAAACAGAATCGA-CGCTATCAAAC 105936 | || ||||| ||||||||| |||| | | ||| || || | | ||||| | Sbjct 181893 CTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACCGA-TCTAGCATTATCATAG 181951 Query 105937 GAAATTAAATCCNNNNNNNNNNNNNCAAAAACGTACGAAGCTTGAGCGACATTGTCAAAC 105996 | | | ||| || ||||| | ||||| ||||||||||| | Sbjct 181952 GTTACAAGATCTCCAGTTGATGGTCTGAAGACGTAAGGGGCTTGGGCGACATTGTCGTAA 182011 Query 105997 GTGTACACGTACGTG--TTCAG---TTTTGTTTG-AATCTGTCGGTAATCTACGACGCCG 106050 | || | || || || || ||| || | ||||| | || || || || ||| Sbjct 182012 TGGAACTCCCACTTGCCTTGAGCGATTTCATTCGCAATCTCCCTATAGTCAACCACTCCG 182071 Query 106051 TCCTCCCAAGTGCCC--GACACGGGCCCGTTGCCGATTCCCGAAAAATAGTTGTTGCCAG 106108 || | |||||| || |||| || || || || | | || | || ||||| | Sbjct 182072 TCTTGCCAAGTTCCTTTGACA-GGTCCAGTAGC-GTTGCCTGTGAAGGGAATGTTGTCTT 182129 Query 106109 TATAATTGGTCACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTGT 106168 | |||| ||||| ||||| || || || ||||| ||||| ||||| | || || | Sbjct 182130 TGTAATCATGAACGCCAGTCCAACCACGACCATACATAGCAACACCTACTACAATCTTCT 182189 Query 106169 TGGGATCGACGTCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTCTT 106228 | |||| || | || |||||| | || || | | | |||||| |||| | Sbjct 182190 TAGGATTCACTCCCTGCGCCAGCAAGTATTTTACTCCGAAGTCAGATGTGTAAGTTTCCT 182249 Query 106229 CGGAATTCCAACTAGGCGCATATACCGTCGTTTGATAGCCCAGATCTGTG-TTCGACCAC 106287 || |||||| ||||| || | | |||||||| || ||| ||| || ||||| Sbjct 182250 TGGGATTCCACGCTGGCGCGTACAATGGCGTTTGATGTCCAAGAG-TGTCATTTGACCAG 182308 Query 106288 GCCCCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTA 106347 || || || || ||||||||||| | |||||| | |||| ||| ||||| || | | | Sbjct 182309 GCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGCCA 182368 Query 106348 TAGTTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAAT 106407 |||| ||| || ||||| || | || ||||| ||||| ||||||||||| Sbjct 182369 TAGTCTACAACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGTTAATTCGTATTTC 182428 Query 106408 TTGCCCGTTTGCAGTTCTAATTCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACGACA 106467 || || | | | | ||||| ||||| | || || |||| || || ||| Sbjct 182429 TTACCATTCTTAGCTGAGAGCTCGTCGAGCATCTCACGTAATTCTTTCATCAAACTTACA 182488 Query 106468 TATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGCCCCTTTGCCGCCTGGA 106527 || || | || ||| | || | ||| || || |||||||| || || Sbjct 182489 TAACAATCACCATC---TTCTGGGCTACCGAGGTCAGGGTTAGCACCTTTGCCACCAGGG 182545 Query 106528 AATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTTACA 106587 || |||||||| ||||| || ||||| || |||||||| | | | ||| |||||||| Sbjct 182546 AACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAGAAACTCCTTTACT 182605 Query 106588 GAATTTACAAACACGT-TTCTTTTTTCAACGTCATGCATAAAATAGAAGGGGTCTGATAG 106646 || | ||||| ||| |||| || |||| | ||| |||| || || | || Sbjct 182606 GACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAACTAAAAAGAAGAAAGGATCGGCAAG 182664 Query 106647 CGTCCAACCGCCTATAGACGGAAGCACTTTTAAAT----GCGGATTTGCCAATTTAGCCG 106702 |||||| || || ||||| ||||| | || || | |||| ||| ||||| | Sbjct 182665 CGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGT---TTTAGT-G 182720 Query 106703 CCATCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGCG 106762 ||| || || |||||||| || ||||||||||||||||| | |||| |||||||| | Sbjct 182721 ACATTAATTGGCCAAAGTTGCCTTTGTAAGGCTCGTTCCATGAAGACAATCCTTTTTGTG 182780 Query 106763 GCTTCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTGC 106822 | || |||| || ||||| |||||||| || || ||||| || || | || || | | Sbjct 182781 GTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCTAC 182840 Query 106823 ATGATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCAT 106882 | || || | | || ||||| || || |||||| ||| || || || | Sbjct 182841 AGGACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAACTATCATTGATGCCGT 182900 Query 106883 CACCGCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACTT 106942 |||||||||| || || ||||| ||||| | ||||| | | ||| || | || | Sbjct 182901 CACCGCCGCAAATTGGGATAAAGCCGTAGAGCAAATGAGTAAGATTAGGTATAGGTATAC 182960 Query 106943 TATCTACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGCGGCGACAGTTT 107002 ||| ||||| || || | ||| || |||||||| || || || || | ||| || Sbjct 182961 GATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTAGGCACCCACAACTT 183020 Query 107003 TGTCC---TCTCT-CCTGCCGGGCTCGTTGTTTTCCAGCCATGTGTACTCGAGCGGAGCT 107058 | ||| | | | | || |||| || ||||| | |||| || || || |||| | Sbjct 183021 T-TCCAGATGTTTGCTTGAACGGCTTATTTTTTTCTCCCAATGTATATTCCAGAGGAGGT 183079 Query 107059 AGATGGCCGCCGTCGGTGTTTGCCAC 107084 | ||| | || ||||| | ||||| Sbjct 183080 AAATGACTTCCATCGGTATCGGCCAC 183105 >seq3424 Length=494560 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||| ||| | || || ||||| || || ||| ||| |||| Sbjct 289066 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAGGCTTC 289125 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| |||||| |||||||| || | || || || Sbjct 289126 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 289185 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| ||||| ||||| || ||||| |||||||| || || | |||||||| Sbjct 289186 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAA 289245 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| ||||||||| ||||| |||| Sbjct 289246 TATTCAAAAGGAATCTACTTTGCACTTGGT 289275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || ||||| ||| | || || || || || || ||| || ||||| Sbjct 288838 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 288897 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || || |||| || || ||||||||| | ||| ||||| Sbjct 288898 TGATACAATTGAAAATGTTAAAGCGAAAATTCAG-GATAAAGAGGGAATTCCCCCAGATC 288956 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTA 28729 | || |||||||| ||||| || || || | |||||| | | ||||| | ||||| Sbjct 288957 AGCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGATTA 289014 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 |||||||| |||||||||||| ||||| | ||| || Sbjct 289015 CAACATTCAGAAAGAATCTACTTTGCACCTAGTACTA 289051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||| ||| | || || || || || || ||| |||| |||| Sbjct 289522 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTC 289581 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||||| || |||||||| | ||| |||||| Sbjct 289582 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 289641 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 || |||||||| ||||| || || || | |||||| | | ||||| | || || Sbjct 289642 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGACTAC 289699 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTA 28763 || ||||| || ||||||||| |||| ||||| Sbjct 289700 AATATTCAGAAGGAATCTACTTTGCATCTGGTA 289732 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || |||||||| ||||| || |||||||| || ||| |||| |||| Sbjct 288611 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 288670 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| ||| || ||||| || || | || ||||||| Sbjct 288671 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAA 288730 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || ||||| || || || || || |||||||||||| | | ||| | | || |||| Sbjct 288731 CAAAGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCACACTCT--CAGACTATA 288788 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 | || || || ||||||||| ||||| | || ||| Sbjct 288789 ATATCCAGAAGGAATCTACTTTGCACTTAGTTTTA 288823 >seq2787 Length=76071 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||| | || || ||||| ||||| ||| ||| |||| Sbjct 39963 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 40022 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| |||||||| || | || |||||| Sbjct 40023 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAA 40082 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||| ||||||||||| ||||| |||||| | || || | || || ||| Sbjct 40083 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAAC 40142 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||||||| ||||| | ||| | | ||| |||| || || Sbjct 40143 ATCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTTAAGAGGTGGTAT 40192 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || ||||| |||||| | ||||||||||||||||| ||| |||||| Sbjct 39504 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 39563 Query 28611 TCAGAGACGGTGGCCGATCT-CAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || | |||| |||| || ||||| || || | || ||| Sbjct 39564 TCCGATACTATTGAAAATGTAAAAGCCAAAATTC-AAGACAAGGAAGGCATTCCTCCAGA 39622 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | | || || || || || ||||||||||| ||| | | || || Sbjct 39623 TCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACTA 39682 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| |||||||||||||||||||| ||| ||||||| Sbjct 39683 TAATATTCAAAAAGAATCTACTCTTCACTTGGTATT 39718 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| |||||||| || || || ||||||||| ||| ||||| || Sbjct 40647 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 40706 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| ||||| || || ||||| | ||| ||| ||| Sbjct 40707 GACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAA 40766 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || ||||| || || |||||||||||| | ||| || | ||||| || Sbjct 40767 CAACGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 40826 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| ||||| || || |||||| Sbjct 40827 ATTCAGAAAGAGTCAACCCTGCAC 40850 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || || |||||||| || || || || || Sbjct 39734 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTC 39793 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||| ||| ||||||||||| | ||| |||||| Sbjct 39794 CGACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCA 39853 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 |||||| ||||| ||||| || |||||| | |||||| | | | ||| | |||||| Sbjct 39854 ACAGAGGCTTATTTTTGCTGGAAAACAACTAGAAGATGGCCGTACATTAT--CTGATTAT 39911 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || |||||||| |||||||| || || | ||||| Sbjct 39912 AATATTCAAAAGGAATCTACCCTACATTTAGTATT 39946 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| |||| || || ||||||||| ||| |||||| || Sbjct 40191 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 40250 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| ||||||||||| | || ||||| Sbjct 40251 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 40310 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | ||||||||||| || || |||||||||||| | || || | || || ||| Sbjct 40311 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAAC 40370 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || || || || ||||| || || Sbjct 40371 ATCCAGAAGGAGTCTACCCTTCA 40393 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| ||| | || || ||||| || || ||| ||||| ||| Sbjct 41103 ATGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 41162 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || || ||| ||||||||||| | ||| ||||||| Sbjct 41163 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 41222 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || || || ||||| || |||| ||| ||| | | || || || Sbjct 41223 CAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGGCGTACTCTTTCTGACTACAAT 41282 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| || ||| ||||| | |||||| | ||||||||||| || Sbjct 41283 ATTCAGAAAGAGTCCACTTTGCACTTAGTATTACGTTTACGAGGAGGTAT 41332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425382459468111