Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_020485.1 Length=34302 Score E Sequences producing significant alignments: (Bits) Value seq3063 255 1e-63 >seq3063 Length=7092 Score = 255 bits (282), Expect = 1e-63 Identities = 308/419 (74%), Gaps = 0/419 (0%) Strand=Plus/Plus Query 10869 GTTAGCGCTTATGAGCAGACAGTAAAAGAGGAAATGAACTTTCAGAAAAGCTTTAATCAT 10928 |||| ||| || |||||||| || || |||| || |||||||| ||||||||||| | Sbjct 6673 GTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAAC 6732 Query 10929 CACGTGCGAACACTTATTGCGCGTGAAGAGGTAGCAATTGGTCTTATGCATTTGTGGGAC 10988 |||||||| || ||| | ||||| || ||||| || || || || |||||| |||||||| Sbjct 6733 CACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGAC 6792 Query 10989 TTTGTGGAGGCCTATGTTCAAAATCCCAGCAGCAAGCCGTTAACAGCACAACTTTTTCTT 11048 ||||| || | ||||| || | ||||||||| | | || || || || ||| Sbjct 6793 TTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCTT 6852 Query 11049 ATTGTTCAGCACAGTAGAGATAATGAAACTTTTAGGGAAGCCATGCTAAACATTGCAGAA 11108 || || |||||||| || || || || | || ||||| || |||||||||| | ||| Sbjct 6853 ATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGAG 6912 Query 11109 CCGGAGGGCCGTTGGCTTCTTGACTTAATTAACATTTTGCAAAGCATTGTAGTACAAGAG 11168 || |||||||| ||||| || || || || |||||| |||| ||||| || || || ||| Sbjct 6913 CCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGAG 6972 Query 11169 CGCTCCCTAAGTTTGTCAGACAAAGTTGCCGCTATTAACTACAGCATGTTGTCTTTGGGC 11228 ||| | | || || | ||||| || ||||| |||||||| |||| | | ||||| Sbjct 6973 CGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGGC 7032 Query 11229 AAATTTTATGCGCGAAAAATTTACAAGTCGCCATTTGTGCCTATTGACAAGGAGGTAAA 11287 || ||||| || || || || ||| | | || | || || || |||||||||||||| Sbjct 7033 AAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091 Score = 87.8 bits (96), Expect = 4e-13 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 15038 AACCAAAATGTATGGAGGCGCCAAAAGACGTTCGCCCCAACATCCAGTGCGTGTGCGCGG 15097 || ||| |||| ||| || || || | || || |||||| |||||||| |||||||| Sbjct 5 AAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGCGG 64 Query 15098 ACATTTTAGGGCACCGTGGGGTTCGCATACCAGGGGCCGTACTGGTCGCACCACTGTTGA 15157 || | | || || ||||| |||| | | ||||| ||||| |||||||| || || Sbjct 65 GCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTGGGCGCACCACCGTCGA 124 Query 15158 TGATGTAATTGATAGCGTGGTTGCAGATGCGCGCAACTACCAGCCGAC 15205 ||| | ||||| ||||| | || |||||||||||| ||| || Sbjct 125 TGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCAC 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109639189544112