Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3345 185 1e-41 >seq3345 Length=207354 Score = 185 bits (204), Expect = 1e-41 Identities = 465/701 (66%), Gaps = 22/701 (3%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 |||||||| |||||||| ||| | || |||||||||||||||| |||||||| ||||| Sbjct 112323 GAGACTGGTACACCATACATGTTGTATAAGGATGCTTGTAACAGAAAGAGTAATCAAAAA 112382 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| | || || || || | ||||||||||| || || | | ||||| | Sbjct 112383 AATCTTGGCACTATTAAATGTAGCAATCTTTGCACTGAGGTTGTGCAATACACTTCAGAA 112442 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 ||||| ||| || ||||| | || || || || ||| | || ||| |||| | Sbjct 112443 GATGAAGTGGCAGTGTGCAACCTTGCTTCCATAGCACTTAACATGTTTGT---TGAAAAT 112499 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | | | ||| ||| | ||||| | | ||||||||||||||||| || ||||| || Sbjct 112500 AAT---AGATTTAATTTTAAAAAATTAAAAGAAATCACAAAGATTGTAACTCAAAATTTA 112556 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATG 76201 ||| ||| ||||| ||||||||||| || ||| || || || |||||| Sbjct 112557 AACAAAGTTATTGATGTTAATTTTTATCCTGTCCCTGA---AGCAAAAACTTCAAATATG 112613 Query 76202 CGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGC 76261 |||| |||||||||||| | |||||||| || | || |||| ||| | ||| | Sbjct 112614 AGACATAGACCTATTGGTATTGGTGTTCAGGGCATGGCAGATGCGTTTGTGTTGATGAGA 112673 Query 76262 TACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 | | || || |||| | | ||| | || |||||||| || ||| Sbjct 112674 ATTTCTTACGAAAGTGAGAAAGCAATACTTCTCAATCAACAAATATTTGAAACAATTTAT 112733 Query 76322 CACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTT 76381 | | | | || || ||||||||||| |||||| ||||| | || |||| | Sbjct 112734 TATGGTGCATTAGAAGCTAGTTGTGAATTAGCTGAAAAAGAAGGTGCATACAGCACATAT 112793 Query 76382 GAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG---AAGGTGAAACC 76438 | || ||| || |||||| | || |||| ||||||||||| || | || Sbjct 112794 CAAGGGAGTCCAGCAAGCCAAGGTATCCTCCAGTATGATATGTGGGACAAAACTCCTACA 112853 Query 76439 AAGCTCAACTACGACTGGGATGTTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTA 76496 | || | ||||||| || ||||| ||| || ||| | | ||| | || | Sbjct 112854 GACCT---TTGGGACTGGGCTGCCCTCAAAGAAAAGATAGCAA--AACATGGTTTGCGCA 112908 Query 76497 ACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATG 76556 | ||| ||||| || |||||||| || ||||| || |||||||| | || || | || Sbjct 112909 ATTCTCTATTGATAGCTCCAATGCCGACTGCCTCTACTGCACAAATTCTTGGCAACACTG 112968 Query 76557 AATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGA 76597 ||| |||||||| | ||| |||| || |||| |||||| Sbjct 112969 AATCTTTTGAACCCTTTACATCAAATATTTACCAAAGAAGA 113009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596537467269920