Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_021168.1 Length=34391 Score E Sequences producing significant alignments: (Bits) Value seq3063 352 6e-93 >seq3063 Length=7092 Score = 352 bits (390), Expect = 6e-93 Identities = 330/420 (79%), Gaps = 0/420 (0%) Strand=Plus/Plus Query 10586 GTTACCGCGTACGAGCAGACGGTGAACGAGGAGCGAAACTTCCAAAAAAGCTTTAACAAT 10645 ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct 6673 GTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAAC 6732 Query 10646 CACGTTAGGACCCTGATTGCGCGAGAGGAGGTGGCCACGGGACTGATGCATCTGTGGGAT 10705 ||||| | || || | ||||| ||||||||||| | |||||||||||||||||||| Sbjct 6733 CACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGAC 6792 Query 10706 TTCATAGAGGCGTACGTACAGAATCCTACTAGCAAGCCGTTGACGGCGCAGCTGTTCTTG 10765 || || ||| | || || || | |||||||||| | | ||||||||||||| | Sbjct 6793 TTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCTT 6852 Query 10766 ATAGTTCAGCACAGTCGCGACAACGAAACGTTTCGCGAGGCCATGTTAAACATCGCGGAG 10825 ||||| |||||||| | |||||||| | || | || || || ||||||| | ||| Sbjct 6853 ATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGAG 6912 Query 10826 CCCGAGGGTCGGTGGTTGCTGGATCTGGTGAACATCTTGCAAAGCATAGTAGTTCAGGAG 10885 |||||||| || ||| |||| ||| || | ||||| |||| |||||||| || |||||| Sbjct 6913 CCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGAG 6972 Query 10886 AGGAGCCTGAGCTTGGCCGATAAGGTAGCGGCTATTAACTACTCAATGCAGAGTCTGGGT 10945 | ||| ||||| |||| || ||||| || || |||||||| || |||| |||||||| Sbjct 6973 CGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGGC 7032 Query 10946 AAATTTTACGCCCGCAAAATCTACAAGAGTCCATACGTTCCCATCGACAAAGAGGTAAAG 11005 || |||||||||||||| || ||| | | || ||||||||||| ||||| ||||||||| Sbjct 7033 AAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAAG 7092 Score = 93.3 bits (102), Expect = 9e-15 Identities = 138/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 15436 CGCACCGCGGCGCAGGGTGCGGTGGAAAGGGCGGCGTGTCCAGCGCGTGCTGAGACCCGG 15495 ||| || |||| |||| | ||||||||| || || || || || || ||||||| Sbjct 791 CGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACGTGTTTTGCGACCCGG 850 Query 15496 CACCACGGTGGTGTTTACCCCGGGACAGCGTTCGGCTGTGCGGGGTTTCAAGCGGCAGTA 15555 |||||| || || ||||| || || |||| || | || | |||||| ||| Sbjct 851 CACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACC---CGCACCTACAAGCGCGTGTA 907 Query 15556 CGATGAGGTGTACGGCGACGAAGACATTTTGGAGCAAGCCGCGCAGCAAATTGGAGAGTT 15615 |||||||||||||||||||| ||| | | ||||| ||| ||| | || ||||| Sbjct 908 TGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCGCCTCGGGGAGTT 967 Query 15616 TGCGTACGGAAAGCG 15630 ||| ||||||||||| Sbjct 968 TGCCTACGGAAAGCG 982 Score = 89.7 bits (98), Expect = 1e-13 Identities = 153/222 (69%), Gaps = 9/222 (4%) Strand=Plus/Plus Query 14702 CAAGATGTACGGCGGCGCCAAGAGGCGTTCTAGTCAGCATCCGGTGCGCGTCCGAGGTCA 14761 |||||||| ||||| || |||| ||| || || || || |||||||| || || || Sbjct 8 CAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGCGGGCA 67 Query 14762 CTACCGCGCTCCCTGGGGGGCCTATAAGCGCGGACTGTCCGCCCGCACGGCCGTGGATGA 14821 ||||||||| |||||||| || | || ||||| | | | ||||| |||| ||||| Sbjct 68 CTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTGGGCGCACCACCGTCGATGA 127 Query 14822 CACTATCGACGCCGTCATCGCCGACGCCCGACAGTACAAACC--TGCC-------GTGTC 14872 | | || ||||| || | | || || || | |||| || ||| ||||| Sbjct 128 CGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCCACCAGTGTC 187 Query 14873 CACAGTGGATTCCGTAATAGACAGCGTGGTGGCCGGAGCCCG 14914 ||||||||| | | || | | ||||||| ||||||||| Sbjct 188 CACAGTGGACGCGGCCATTCAGACCGTGGTGCGCGGAGCCCG 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109923974971074