Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq2787 176 9e-39
seq3424 138 2e-27
seq1305 134 3e-26
seq1351 127 4e-24
>seq2787
Length=76071
Score = 176 bits (194), Expect = 9e-39
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||||| ||||| | ||||| ||| | |||| ||| || ||| || || |||
Sbjct 40420 ATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 40361
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||||||| |||||||||||||| | | ||| |||||||||
Sbjct 40360 GACAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 40301
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || ||||| ||||| |||||| ||||||||| |||| ||| || | |||
Sbjct 40300 GGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCC 40241
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || |||||||| || ||||||| ||||||| ||| ||||||||
Sbjct 40240 ACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191
Score = 163 bits (180), Expect = 6e-35
Identities = 176/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | |||||| ||||| || || | ||||| ||||| |||||||| |||
Sbjct 39736 ATTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCA 39677
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || ||| | || |||||||| || ||||| || || || | |||||||| ||
Sbjct 39676 GAAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGA 39617
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| ||||| ||||||||| |||| ||| || | |||
Sbjct 39616 GGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCA 39557
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
||||| | ||||||||||||||| || | |||||| | ||| |||||||||||
Sbjct 39556 ACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 39504
Score = 159 bits (176), Expect = 7e-34
Identities = 176/232 (76%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
||||| || | ||| || ||||||||||||| |||| || ||| || |||||||||||
Sbjct 39964 ATACCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGA-ATATTATAATC 39906
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
||||||||| || |||| || | |||||| |||||||| || | ||||||||||| ||
Sbjct 39905 AGATAATGTACGGCCATCTTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGG 39846
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || || ||||| ||||| || || || ||||| |||| || |||| ||
Sbjct 39845 GGGAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTC 39786
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||| |||| ||| |||||||| || || | || |||| ||| |||||||||
Sbjct 39785 TACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 39734
Score = 154 bits (170), Expect = 3e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| | ||| | |||||| || ||||||| ||||| ||| || || |||
Sbjct 40192 ATACCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCA 40133
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | ||| || |||| || ||||| || || ||||| || | | |||||||| ||
Sbjct 40132 GACAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGA 40073
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| ||||| |||||| ||| ||||| || | || || | |||
Sbjct 40072 GGAATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCA 40013
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||| |||||| ||||| ||||| | |||||||| ||| || |||||
Sbjct 40012 ACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 39963
Score = 141 bits (156), Expect = 2e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| |||| ||||| | ||| || || | || | |||||| |||||| || |||
Sbjct 41104 ATACCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCA 41045
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| |||||||||||| ||||| | | |||||||| ||
Sbjct 41044 GACAGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGA 40985
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||| |||||||| || ||| ||| ||||| || | ||||| | ||
Sbjct 40984 GGAATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCA 40925
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| | ||| || ||||| ||||| | |||||| | |||||| ||||||
Sbjct 40924 ACTTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCATT 40874
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | |||||| | ||||||||| ||||||| ||||| ||| ||||| ||
Sbjct 41560 ATCCCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCC 41501
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| || || ||||||||||||||||| | | |||||| || ||
Sbjct 41500 GACAGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGG 41441
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || || |||||||| || ||| || ||||| |||| || || | ||
Sbjct 41440 GGAATGCCCTCCTTATCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCC 41381
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | ||| ||||| || ||||| | || |||| ||| ||||||||
Sbjct 41380 ACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 41331
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||||| ||||| | ||||||||| | |||| |||||| ||| || || |||
Sbjct 40648 ATACCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCA 40589
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| || | || || ||||||||||| | | |||||||| ||
Sbjct 40588 GACAGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGG 40529
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || ||||||||||| || ||| |||||||| || | || || | ||
Sbjct 40528 GGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCC 40469
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || ||||| || || || || |||| ||| || | |||||| |||||
Sbjct 40468 ACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 40419
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||| |||| | |||||||||||| || ||||| | |||||| ||||| || |||
Sbjct 41332 ATACCTCCTCGTAAACGTAATACTAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCA 41273
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| || || ||||| || || | | |||||||| ||
Sbjct 41272 GAAAGAGTACGCCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGG 41213
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || ||||| ||||| || || ||| ||||| |||| ||||| | |||
Sbjct 41212 GGAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCA 41153
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||| || || ||||| || || | ||| || | ||| ||||||||
Sbjct 41152 ACTTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 41103
>seq3424
Length=494560
Score = 138 bits (152), Expect = 2e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| |||||||| ||||| | ||||||||||||||||| ||||| ||||| || ||
Sbjct 289980 ATCCCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCT 289921
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|||| ||| ||| |||| || | ||| || |||||||| || | || ||||| || ||
Sbjct 289920 GATAGTGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGA 289861
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| |||||||| ||||| || ||||| || | || || | ||
Sbjct 289860 GGAATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCA 289801
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| || || || || || ||||| | ||| || | |||||| ||||||
Sbjct 289800 ACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTCACAAATATTTGCATT 289750
Score = 136 bits (150), Expect = 8e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
|| ||||| ||||| || | || || || ||||||| || ||| || |||||||||||
Sbjct 289296 ATTCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTTTGA-ATATTATAATC 289238
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
|| | ||| ||| |||| |||| ||||| || ||||| || | |||||||| |||||
Sbjct 289237 TGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGG 289178
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || |||||||| ||||| ||||| || ||||| ||| | ||| || | ||
Sbjct 289177 AGGAATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTC 289118
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| | || || ||||| ||||| | ||| || | |||||| ||||||
Sbjct 289117 CACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289066
Score = 123 bits (136), Expect = 5e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||||||||| | | || | || | |||| ||||| ||||||||| || ||
Sbjct 290662 ACCACCTCTAAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTCTGA 290603
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|||||| || |||| |||| ||| || || || || || | ||| |||||||| || ||
Sbjct 290602 TAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGG 290543
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| ||||| |||||||| || || || ||||| ||| | ||| || | ||| ||
Sbjct 290542 AATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 290483
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||| | ||| || ||||| ||||| | ||| || | ||| || |||||
Sbjct 290482 TTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 290435
>seq1305
Length=286731
Score = 134 bits (148), Expect = 3e-26
Identities = 170/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCA 192366
|||| || | ||| || | || | ||| || || | || ||| || || || || |||
Sbjct 24756 TACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGA-ATGTTGTAGTCA 24814
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| ||||| ||| |||| || | |||||||||||||||||| || | || || || |||
Sbjct 24815 GACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGT 24874
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| |||||||| |||||| ||||||||| ||||| ||| || | ||
Sbjct 24875 GGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTCC 24934
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || || |||||||||||||| || | || || | || || ||||||
Sbjct 24935 ACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 24985
>seq1351
Length=825266
Score = 127 bits (140), Expect = 4e-24
Identities = 145/195 (74%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165
||||||||||| ||||| || ||||| ||| ||||||||| |||||||| ||| ||
Sbjct 602239 ATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGAAAACCATAGAAG 602298
Query 50166 TGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACA 50225
|| ||||| | ||||| || | || || || || || |||||| |||
Sbjct 602299 CACCTGGCTTCAGTCACTTGAACCTCTTGTGAAAAACGCTCCACCAAGTTCTCATTAACA 602358
Query 50226 ATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCT 50285
||||||||||| || || |||||||||||||| | || ||||||||||| ||| ||||
Sbjct 602359 ATACCATCAGAAGCCGCAAAGAATGCTAAAACATGCTTGATAAAATGTTTCTCACAATCT 602418
Query 50286 TTTAAATTTTCCCAA 50300
||||| | ||||||
Sbjct 602419 TTTAATGTCTCCCAA 602433
Score = 116 bits (128), Expect = 7e-21
Identities = 163/225 (72%), Gaps = 4/225 (2%)
Strand=Plus/Plus
Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905
|||| |||||||| |||| ||||||||| ||||| ||||| ||||| | |||| ||||
Sbjct 601394 CCTCATCCCTAGAAATAAGTTCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 601453
Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965
| | |||||||||||| ||||| || | || || ||||| ||||| || ||||| |
Sbjct 601454 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAG 601513
Query 49966 CTATTATTCTTGCTCCAAACATTAATTTATCAT-CT-AATATCCAATTTATAGCCCAATC 50023
| ||||| | | |||||| || | | || | || ||||| | || ||||| ||
Sbjct 601514 CAATTATACGTTCTCCAA--ATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTC 601571
Query 50024 TGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068
||| || || || | | | |||| | |||| || || || |||||
Sbjct 601572 TGCCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAATAA 601616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984425647782150
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