Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2787 176 9e-39 seq3424 138 2e-27 seq1305 134 3e-26 seq1351 127 4e-24 >seq2787 Length=76071 Score = 176 bits (194), Expect = 9e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | ||||| ||| | |||| ||| || ||| || || ||| Sbjct 40420 ATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 40361 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||||||| |||||||||||||| | | ||| ||||||||| Sbjct 40360 GACAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 40301 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| |||||| ||||||||| |||| ||| || | ||| Sbjct 40300 GGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCC 40241 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || |||||||| || ||||||| ||||||| ||| |||||||| Sbjct 40240 ACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191 Score = 163 bits (180), Expect = 6e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| ||||| || || | ||||| ||||| |||||||| ||| Sbjct 39736 ATTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCA 39677 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || |||||||| || ||||| || || || | |||||||| || Sbjct 39676 GAAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGA 39617 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| ||||||||| |||| ||| || | ||| Sbjct 39616 GGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCA 39557 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||||||||||||||| || | |||||| | ||| ||||||||||| Sbjct 39556 ACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 39504 Score = 159 bits (176), Expect = 7e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | ||| || ||||||||||||| |||| || ||| || ||||||||||| Sbjct 39964 ATACCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGA-ATATTATAATC 39906 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||||||||| || |||| || | |||||| |||||||| || | ||||||||||| || Sbjct 39905 AGATAATGTACGGCCATCTTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGG 39846 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || ||||| ||||| || || || ||||| |||| || |||| || Sbjct 39845 GGGAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTC 39786 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| |||| ||| |||||||| || || | || |||| ||| ||||||||| Sbjct 39785 TACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCATT 39734 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | ||| | |||||| || ||||||| ||||| ||| || || ||| Sbjct 40192 ATACCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCA 40133 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || ||||| || || ||||| || | | |||||||| || Sbjct 40132 GACAGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGA 40073 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| ||| ||||| || | || || | ||| Sbjct 40072 GGAATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCA 40013 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| |||||| ||||| ||||| | |||||||| ||| || ||||| Sbjct 40012 ACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 39963 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||| ||||| | ||| || || | || | |||||| |||||| || ||| Sbjct 41104 ATACCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCA 41045 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| |||||||||||| ||||| | | |||||||| || Sbjct 41044 GACAGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGA 40985 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || ||| ||| ||||| || | ||||| | || Sbjct 40984 GGAATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCA 40925 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| || ||||| ||||| | |||||| | |||||| |||||| Sbjct 40924 ACTTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCATT 40874 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | ||||||||| ||||||| ||||| ||| ||||| || Sbjct 41560 ATCCCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCC 41501 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || || ||||||||||||||||| | | |||||| || || Sbjct 41500 GACAGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGG 41441 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || ||| || ||||| |||| || || | || Sbjct 41440 GGAATGCCCTCCTTATCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCC 41381 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||| || ||||| | || |||| ||| |||||||| Sbjct 41380 ACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 41331 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | ||||||||| | |||| |||||| ||| || || ||| Sbjct 40648 ATACCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCA 40589 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | || || ||||||||||| | | |||||||| || Sbjct 40588 GACAGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGG 40529 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| || ||| |||||||| || | || || | || Sbjct 40528 GGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCC 40469 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || || || |||| ||| || | |||||| ||||| Sbjct 40468 ACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 40419 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||| | |||||||||||| || ||||| | |||||| ||||| || ||| Sbjct 41332 ATACCTCCTCGTAAACGTAATACTAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCA 41273 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || ||||| || || | | |||||||| || Sbjct 41272 GAAAGAGTACGCCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGG 41213 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || ||| ||||| |||| ||||| | ||| Sbjct 41212 GGAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCA 41153 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || || ||||| || || | ||| || | ||| |||||||| Sbjct 41152 ACTTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 41103 >seq3424 Length=494560 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | ||||||||||||||||| ||||| ||||| || || Sbjct 289980 ATCCCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCT 289921 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||| ||| |||| || | ||| || |||||||| || | || ||||| || || Sbjct 289920 GATAGTGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGA 289861 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| ||||| || ||||| || | || || | || Sbjct 289860 GGAATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCA 289801 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || || || || || ||||| | ||| || | |||||| |||||| Sbjct 289800 ACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTCACAAATATTTGCATT 289750 Score = 136 bits (150), Expect = 8e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| ||||| || | || || || ||||||| || ||| || ||||||||||| Sbjct 289296 ATTCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTTTGA-ATATTATAATC 289238 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | ||| ||| |||| |||| ||||| || ||||| || | |||||||| ||||| Sbjct 289237 TGACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGG 289178 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || |||||||| ||||| ||||| || ||||| ||| | ||| || | || Sbjct 289177 AGGAATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTC 289118 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || || ||||| ||||| | ||| || | |||||| |||||| Sbjct 289117 CACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289066 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||||||||| | | || | || | |||| ||||| ||||||||| || || Sbjct 290662 ACCACCTCTAAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTCTGA 290603 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||| || |||| |||| ||| || || || || || | ||| |||||||| || || Sbjct 290602 TAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGG 290543 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| |||||||| || || || ||||| ||| | ||| || | ||| || Sbjct 290542 AATGCCTTCCTTATCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCAC 290483 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| | ||| || ||||| ||||| | ||| || | ||| || ||||| Sbjct 290482 TTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 290435 >seq1305 Length=286731 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCA 192366 |||| || | ||| || | || | ||| || || | || ||| || || || || ||| Sbjct 24756 TACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGA-ATGTTGTAGTCA 24814 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| || | |||||||||||||||||| || | || || || ||| Sbjct 24815 GACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGT 24874 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| |||||| ||||||||| ||||| ||| || | || Sbjct 24875 GGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTCC 24934 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || |||||||||||||| || | || || | || || |||||| Sbjct 24935 ACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 24985 >seq1351 Length=825266 Score = 127 bits (140), Expect = 4e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 ||||||||||| ||||| || ||||| ||| ||||||||| |||||||| ||| || Sbjct 602239 ATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGCAATTTGAAAACCATAGAAG 602298 Query 50166 TGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACA 50225 || ||||| | ||||| || | || || || || || |||||| ||| Sbjct 602299 CACCTGGCTTCAGTCACTTGAACCTCTTGTGAAAAACGCTCCACCAAGTTCTCATTAACA 602358 Query 50226 ATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCT 50285 ||||||||||| || || |||||||||||||| | || ||||||||||| ||| |||| Sbjct 602359 ATACCATCAGAAGCCGCAAAGAATGCTAAAACATGCTTGATAAAATGTTTCTCACAATCT 602418 Query 50286 TTTAAATTTTCCCAA 50300 ||||| | |||||| Sbjct 602419 TTTAATGTCTCCCAA 602433 Score = 116 bits (128), Expect = 7e-21 Identities = 163/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| |||||||| |||| ||||||||| ||||| ||||| ||||| | |||| |||| Sbjct 601394 CCTCATCCCTAGAAATAAGTTCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 601453 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | | |||||||||||| ||||| || | || || ||||| ||||| || ||||| | Sbjct 601454 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAG 601513 Query 49966 CTATTATTCTTGCTCCAAACATTAATTTATCAT-CT-AATATCCAATTTATAGCCCAATC 50023 | ||||| | | |||||| || | | || | || ||||| | || ||||| || Sbjct 601514 CAATTATACGTTCTCCAA--ATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTC 601571 Query 50024 TGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 ||| || || || | | | |||| | |||| || || || ||||| Sbjct 601572 TGCCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAATAA 601616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984425647782150