Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3366 167 7e-36 seq3345 134 4e-26 seq2167 129 2e-24 >seq3366 Length=221407 Score = 167 bits (184), Expect = 7e-36 Identities = 340/497 (68%), Gaps = 10/497 (2%) Strand=Plus/Minus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||||||||| ||||||| | ||| ||| |||||| || || ||||||| || || Sbjct 83557 CCTATCAAATCTACCAGGCCTTAATAAGGCTTTGTCTAAAATGTCCACTCTGTTAGTAGC 83498 Query 288909 TGCCAATACAACAATAGATTCGGT-TTGC-TTAAATCCATCCATACTTGTTAAAATTTGA 288966 || ||||| |||| | || | | ||| || || |||||||| || || ||| Sbjct 83497 AGCTAATACTACAACA--TTGGTTGTTGTATTGAAACCATCCATTTCCACTAGAAGCTGA 83440 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 ||||| || | ||| ||| || ||||| || | | | || ||| ||||| Sbjct 83439 TTAAGAGTATTTTCTTGTTCTGAATG---ACCTCCAAAA-CTTCTGCCTC-CTC-TTTTT 83386 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||||||||| ||||| ||||| || | | ||| |||| || || | || || Sbjct 83385 CTACCAACAGCATCTATTTCATCAATAAATAATATACAGGGAGCATGTTTCCGTGCCATA 83326 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | || | || || || | || | |||| ||||||| ||||||||| ||| || ||| Sbjct 83325 GAGAACATATCCCTGACCCTAGAGGGACCAACACCAACAAACATTTCTAAAAACTCTGAA 83266 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||||| ||| || | ||||| || || || ||| ||| | || ||||| || Sbjct 83265 CCTGATACTGTAATAAAGGGAACATTAGCCTCTCCAGCTGTTGCTTTAGCTAGAAGAGTT 83206 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 ||||| |||||||| ||||| ||||| ||||||| || | ||| || || | Sbjct 83205 TTACCAGTTCCAGGGGGTCCTGTTAATAAGGCTCCCTTAGGAATTTTAGCTCCTAAATCA 83146 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 |||||| || |||| |||| || || | |||| |||| || |||| ||| || || Sbjct 83145 ATATATTGCTGAGGGTTCTTCAAGAAATTGACAAATTCCATAATTTCAATTTTAGCTTCC 83086 Query 289327 TCACATCCTGCTACATC 289343 ||||| || || ||||| Sbjct 83085 TCACAACCAGCAACATC 83069 >seq3345 Length=207354 Score = 134 bits (148), Expect = 4e-26 Identities = 579/900 (64%), Gaps = 38/900 (4%) Strand=Plus/Minus Query 155475 GGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATACCTTGGTTACG 155531 || |||||||| |||||||||| || ||||||||| || || ||| ||| || | Sbjct 112585 GGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTAC-AAT--CTTTGTGATT 112529 Query 155532 TCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATA 155591 ||| |||||| | | | |||| | |||| ||| |||||||| ||| | || Sbjct 112528 TCTTTTAATTTTTTAAAATTAAATCTATTATTTTCA---ACAAACATGTTAAGTGCTATG 112472 Query 155592 GACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 || || || || || || || || | || |||||| |||| |||| ||| Sbjct 112471 GAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCAA 112412 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 || || || || || ||||| | ||| || || ||| || ||||||||||||||| Sbjct 112411 AGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCC 112352 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT---CTTTAGCCAG 155768 || || | |||||||| || || ||||| | || || || | ||| ||| ||| Sbjct 112351 TTATACAACATGTATGGTGTACCAGTCTCTACTTGGGCTTCTATAATTGACTT---CCAT 112295 Query 155769 AGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTT--CATATACA 155826 | || | || | | ||| || | ||| ||| |||||||| |||||| Sbjct 112294 AACTCTTGAGCTCTGACTTGTTTTATAAATCGTTTTTCTTCTTCATATTTGGCATATA-- 112237 Query 155827 GCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 |||| || ||||| || | || ||| || ||||| || | || || || | Sbjct 112236 --GTTCTTCAAATTCCTCTCCAAAGCAGTCAGCGAGGCCAGGACAATCATGAGGACACAT 112179 Query 155885 CAGCGACCAAATTTTATTACCGATTACACGCTC--CATAAATACATCACTCGCCCAAATA 155942 || ||||| || || || || || || |||||| | ||| ||| | Sbjct 112178 GAGACTCCAAACTTCAT--CCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAG 112121 Query 155943 GCATAGAAAAGGTCCCTTGCCTTTGACTCCT--CATCGCCGTGATTCTTCCGTAGCTCTA 156000 ||||| || || || || || | | | | || | | ||||| |||||| || || | Sbjct 112120 GCATAAAACAGTTCTCTAGC-TCTCATTTCTTCCTTACCCGTG-TTCTTCTTTAAATCCA 112063 Query 156001 AGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCT 156060 ||||||| || || | ||| ||||| | ||| || ||||| ||| | | Sbjct 112062 AGAATTCAAATATGTCTGCATGCCAAGGCTCTAAATAAATCGCAAATGCACCGGGACGTT 112003 Query 156061 TG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAA 156117 || ||||| ||||||||||| | ||||| || || | || | | ||| || | | Sbjct 112002 TGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTA 111943 Query 156118 TACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATT--ATG 156175 |||||| || ||||| || || || | ||||| ||||| || ||| Sbjct 111942 GACCATTCGAGACCCCATTAGTGCCAGCTATGTAAGAACCC--TGAGCTCTGATGCAATG 111885 Query 156176 AATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATT 156235 |||||| || || ||||| | ||||||||||| || |||| |||| ||||| Sbjct 111884 TGTATGTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATC 111825 Query 156236 GAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGG 156295 |||||||||||||| ||| |||| ||| | || || |||| || | || || Sbjct 111824 AAAAATACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAGCAGGAGGAAAGCTGCGG 111765 Query 156296 TCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 || ||||| | || |||||||||||| ||||||| ||||||| || | ||||| Sbjct 111764 CCGCGGTGTGGCTGCTGAGAATAGTGTAGGGCTTGCATGTGTAAAATATTTCTCTGACAT 111705 >seq2167 Length=747338 Score = 129 bits (142), Expect = 2e-24 Identities = 209/295 (71%), Gaps = 8/295 (3%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAA-TGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAG 302611 ||||||| | ||||| || || ||||| ||| ||||||||||||||||| ||||||| Sbjct 219234 ATCATAATGTACCATAACTGACT-CCATAGCCTTTATTAAACGACGCTGAATGTAACCAG 219292 Query 302612 TTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGA 302671 || || ||||||||||| |||||||| ||||| ||||||| ||||| || ||||| Sbjct 219293 TTTCAGCAGTTTTTACAGCGGTATCAATGAGACCTTCACGACCTCCCATGGCGTGGAAAT 219352 Query 302672 ATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | | ||| ||| | || ||| | || | || |||||||| | | || | Sbjct 219353 AAAACTCAGAGGGTGTCAAGCCGGCAAGGTATGAATTTTCGACGAAACCTCTAGATTCTG 219412 Query 302732 G--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGA 302788 | || ||||||| ||| | || ||||||| || || || | | ||| | || | Sbjct 219413 GACCGTAATCGTC---TTTGATGAAATGTGGCAATGTTCTTTTACGAAAACCGAACGGAA 219469 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||||| ||||||||||| || || | || | ||| | ||| || || || Sbjct 219470 TACGCTTTCCTTCAACGTTCTGTTGCCCTACACAAGCAATAACCTGTGAGATGTT 219524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471736342330133