Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3829 129 7e-24 seq3103 127 2e-23 seq3494 96.9 4e-14 >seq3829 Length=1076 Score = 129 bits (142), Expect = 7e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| | || | ||||| |||||| | ||| | | || Sbjct 946 GCTTGGCCAACTCGCCGGGCAACAGGAGCCTCACGGAGGTCTGCACCTCCCTGGACGTGA 887 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| | |||||| |||| || || || ||||||| | |||| || |||| | Sbjct 886 TCGTGGACCTCTTGTTGTAGTGGGCGAGTCGCGACGCCTCGGCGGCGATACGCTCGAAAA 827 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||||| |||| ||||||| || ||| |||| Sbjct 826 TGTCGTTCACGAACGAGTTCATGATGGACATCGCCTTGCTGGAGATTCCGGTGTCCGGGT 767 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || || |||||||| ||||||||| Sbjct 766 GGACTTGTTTGAGCACTTTGTAGATG 741 >seq3103 Length=1060 Score = 127 bits (140), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| | || | ||||| |||||| | ||| | | || Sbjct 322 GCTTGGCCAACTCGCCGGGCAACAGGAGCCTCACGGAGGTCTGCACCTCCCTGGACGTGA 263 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| | |||||| |||| || || || ||||||| | |||| || |||| | Sbjct 262 TCGTGGACCTCTTGTTGTAGTGGGCGAGTCGCGACGCCTCGGCGGCGATACGCTCGAAAA 203 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||||| |||| ||||||| || ||| |||| Sbjct 202 TGTCGTTCACGAACGAGTTCATGATGGACATCGCCTTGCTGGAGATTCCGGTGTCCGGGT 143 Query 1254523 GCACCTGCTTGAGCACC-TTGTAGATG 1254548 | || || ||||||||| ||||||||| Sbjct 142 GGACTTGTTTGAGCACCTTTGTAGATG 116 >seq3494 Length=1266558 Score = 96.9 bits (106), Expect = 4e-14 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || |||||| | | || || || |||| |||||| | || | || |||||| Sbjct 401917 GCGAGCTCGCCGGGAAGGAGGAGACGGACGGAGGTCTGCACTTCCCTCGACGTGATCGTT 401976 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 | |||||| |||||||||| ||| ||||||| |||| || || | || ||| Sbjct 401977 GACCTCTTGTTGTAGTGCGCCAGGCGGGACGCCTCGGCCGCGATACGTTCAAAAATATCG 402036 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 |||||||| || ||||| | ||||| | ||| | ||||| || ||| ||||| ||| Sbjct 402037 TTGACAAAGGAATTCATTATAGACATAGCCTTACTCGAGATCCCAGTGTCCGGGTGAACC 402096 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||| ||||| ||| Sbjct 402097 TGCTTCAACACTTTGTAAATG 402117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106785583280953