Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2265 197 1e-45 seq3463 172 5e-38 seq3424 120 3e-22 seq2787 98.7 8e-16 seq1305 93.3 3e-14 seq2396 84.2 2e-11 >seq2265 Length=480565 Score = 197 bits (218), Expect = 1e-45 Identities = 150/173 (87%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 ||||| | ||||||||||| |||| || |||||||||||||||| |||||||||||| Sbjct 393173 GCCGGCCTGCCAAGCGCCTTAGCGACCTCTAGCATGTTGACGATGACGGTCTTGATGCCG 393114 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 393113 TTCCCCTTACCCTCGACCTTGGCGCAGATGCGCGGCATCTTGTAGCGGTAGAACGCGTCC 393054 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCG-TG-GCTGG-TGTTACTTA 34661 |||||||| | ||| |||||||| | |||||| | || ||||| | ||||||| Sbjct 393053 GCCACATTCCTGTTCACGTTCACGGACCCCATGGCTGAGCTGGCTATTACTTA 393001 Score = 140 bits (154), Expect = 3e-28 Identities = 341/515 (66%), Gaps = 29/515 (6%) Strand=Plus/Minus Query 33427 TCCTCGGCCTGCTGCAGCCAGTCCAGGAAGGGCTGCGCGCGGCGCCGCACGTCCGCCATC 33486 || || |||||||||||||| || |||||||||||||| || ||| ||||||| |||| | Sbjct 400857 TCGTCAGCCTGCTGCAGCCACTCTAGGAAGGGCTGCGCACGCCGCAGCACGTCGGCCACC 400798 Query 33487 TCCTCGCGGCTT-AGCGC---TTTGCGGGACGGCTTGTAAAACCACTCCACGATCGCTTT 33542 |||| ||| |||| ||||| || |||||| ||| |||| || || Sbjct 400797 ACCTC----CTTGGGCGCGTACTTGCGTGAGGGCTTGGCGGCCCAATCCAAGACGGCGCG 400742 Query 33543 CTTTTCCACCACGTTCAAGTCGTACAGCAGCTTGAACGCGCCGGCCACTTTGGGCAGCAG 33602 || ||||| | || || |||||| |||||||||| ||| ||| || ||||| ||||| Sbjct 400741 CTCGTCCACGATGTCCAGGTCGTAGAGCAGCTTGAGGGCGGCGGGCAGCTTGGGGAGCAG 400682 Query 33603 CGCCTGGTCCAAAACGCAcagcgcggtgagc---------gcggcccgctgcgcgcgcag 33653 || | || || ||||| |||||| ||||| || | || ||| | Sbjct 400681 AGCGGGTTCGGCGGCGGCGAGCGCAGTGAGCGCATGAAGGGCGGCGCGGGGTGCACGCGG 400622 Query 33654 atcgccgcgcgtaaactgcagcagcagcgcgcggtacttgcgcACGTCCCCGGCGAACGC 33713 |||| |||| | | | || || ||||||| ||||||||| |||||| || Sbjct 400621 ATCGGCGCGGGCGAGGCGGAGGAGGGTGGCGCGGTGGCGGCGCACGTCGGCGGCGAGCGT 400562 Query 33714 CGCCGGCCTCACCAGCACCTCGAACAGCACCAGCGGCGCCTTCGACTTCACCTCCAGTCG 33773 |||| || ||||||||||| || || ||||| || | ||| || || || Sbjct 400561 GCGCGGCGCGACTAGCACCTCGAAGGCGACGAGAGGCGCGTTGGCGCGCACGTCGAGGCG 400502 Query 33774 TTCGGCCTCGTGCAGCAGCTCGGTGGCGATTGTAGCCTGCGAGACGTCGCAAGTGGCGTG 33833 ||||||| ||||| |||| ||| | || || |||| ||| | Sbjct 400501 CGTAGCCTCGTTCAGCACGTCGGCAGCGGTGACCGCGCCCG---CGTC------TGCGCG 400451 Query 33834 CTTTTGCTTGATAAACGCATGAAACATCTTAATGCGCTGCTTTTCGTTCTTTTTTAGGTC 33893 | ||||| | |||| | ||||| | ||||||||||| |||||||| | ||| Sbjct 400450 C---TGCTTCAGGAACGAGTAGAACATGTCCATGCGCTGCTTCTCGTTCTTCTCGCTGTC 400394 Query 33894 TTCATTCAGCGTCATCGACTTGACGCCCTCCGTCA 33928 || ||||||||| |||| |||||||||||| Sbjct 400393 CTCGGACAGCGTCATGCTCTTGGCGCCCTCCGTCA 400359 Score = 113 bits (124), Expect = 4e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260 || |||||||| |||||||||||||| || || ||||| ||| | | | |||||| Sbjct 396388 GCGGGCGGGTTCTTCAGTATGAAGGTATTCAGTTTATGGTTGAATTCCAAGGGGCCGTGG 396329 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320 || ||||| || |||||||| || |||| ||||| | || | |||||| || ||||| Sbjct 396328 TACCCGCACGCCTTGCAGCCTTGCGAGATGGTGTTCCTCTTGGTGGACACTATCAGCTCC 396269 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 ||||| || ||||| || || ||||| | || || ||||| || || Sbjct 396268 GTCTCGGGATTGTCGCACTCGGGACAGAGGACGAATTTGCGAATAAA 396222 Score = 105 bits (116), Expect = 6e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || | ||| ||||| ||||| ||||||| ||| ||||||||||||||| || ||| Sbjct 395347 CCGTCCAACAGATCCTGCAACTTGGCGGAGTCATGGCTGCCGTTGACGATGAAGCGCTCG 395288 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || ||| | |||| ||||||||| ||||| ||||| || |||||||| || || || Sbjct 395287 TTCTTGAAGTCGAACTGCGTTTGGGCGCCGAGCTCACATCCGAAGTATTTAGTGGG 395232 >seq3463 Length=282612 Score = 172 bits (190), Expect = 5e-38 Identities = 580/893 (65%), Gaps = 19/893 (2%) Strand=Plus/Minus Query 28881 CATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAACGACGCCCTTAAA 28940 ||| || | |||||||| | || ||||||||||| ||||| |||| || | ||| Sbjct 182937 CATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGTGACGGCATCAATGATAGTTTAAAA 182878 Query 28941 ACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCCGTTCAGATTTTAAA 29000 || || ||||| |||| || || || || || | ||||||| || || ||| Sbjct 182877 GAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGTGAGGACTTCAAA 182818 Query 29001 GTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGGGCGTGTCTGCGTGG 29060 || | || |||||||| ||||| ||| |||||||||| ||||| || ||||| | ||| Sbjct 182817 GTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATTGTCTTCATGG 182758 Query 29061 AACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATGGCTGCCAAGTTGGCCAATCCACAC 29120 |||||||| ||||||||||| || || || | ||| | || ||| || | Sbjct 182757 AACGAGCCTTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAAGCCCGCCCTGAA 182698 Query 29121 ATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCGACCCTTT-TTATTTT--ATG 29177 | || ||||| || || || || || ||||| | |||| ||||| || |||| | Sbjct 182697 TTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTTCTTCTTTTTAGTT 182638 Query 29178 CACGACGCGGAGAAACGGCGCGTGTTTGTGGACTCGGTCGAGGAATTTTTGCAGGTGTGG 29237 || | | ||| | || |||||| | || || |||| ||| | | ||| Sbjct 182637 GACAAATCTAAGAGAACACG---ATTTGTGCAGTCAGTAAAGGAGTTTCTTCTAACATGG 182581 Query 29238 AAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGGGCGGTAAAGGCGCTAACCC- 29296 ||||| || || || || || || || ||||| || || || || ||||| |||||||| Sbjct 182580 AAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAAGGTGCTAACCCT 182521 Query 29297 GACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTACTGAAGGAATTGCG 29356 ||| || || | | || || | || ||| | ||| |||| ||||| || Sbjct 182520 GAC-CTCGGTAGCCCAGA---AGATGGTGATTGTTATGTAAGTTTGATGAAAGAATTACG 182465 Query 29357 CGCAATGCTGGATAAACTGCAATTGCAAACGGGTAAAACGTATGAATTGACAAGCGCAAT 29416 | ||||| || | || | | | ||||| | || ||||| || || || Sbjct 182464 TGAGATGCTCGACGAGCTCTCAGCTAAGAATGGTAAGAAATACGAATTAACTTCTGCTAT 182405 Query 29417 CAGCTCTGGCCACGACAAAATTGCTGTAGTGAAATACGACGTTGTGCAAAAATTTCTTGA 29476 ||| |||| || ||||| || || | || | | | ||||| | | | || Sbjct 182404 TAGCGCTGGATGGGATAAAATCCAAGTTGTAGACTATGGCAAGGCTCAAAATTATATGGA 182345 Query 29477 TAAAATATTTCTAATGAGTTACGATTTTAAAGGCGCATGGTCAAACACCGATTTGGGATA 29536 | | || || | ||||||||||| || || || || |||||||| | | | ||| | Sbjct 182344 TCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAATGACACTCTTGGACA 182285 Query 29537 TCAAACTACACTCTACGCACCGAGTTGGAATCCCAACGAGCTTTACAACACTGACCACGC 29596 |||||| || | ||||| || ||||||||||| || ||||| ||||| || Sbjct 182284 TCAAACGCCATTGTACGCGCCAGCGTGGAATCCCAAGGAAACTTACACATCTGACTTCGG 182225 Query 29597 CGTAAAGTCGCTCACTAAC-CAAGGCGTGGACCCGCGCAAAATTATTGTGGGCGTCGCCA 29655 ||||| | || || | || || ||| | || || ||| | || || || || | Sbjct 182224 AGTAAAAT-ACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGATTGTAGTAGGTGTTGCTA 182166 Query 29656 TGTACGGCCGCGGTTGGACGGGCGTGACCGGTTACGTCGGTGACAACTAT---TTTAAAG 29712 |||| || || |||||||| ||||| | ||| | |||||| | || | || Sbjct 182165 TGTATGGTCGTGGTTGGACTGGCGTTCATGATTA---CAAAGACAACATTCCCTTCACAG 182109 Query 29713 GCACAGCTGCCGGGCCCGTGACCGGCACTTGGGATGACGGAGTTGTCGACTAT 29765 ||| ||| | || || || | || |||||| | |||||||| || |||||| Sbjct 182108 GCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGGTTGACTAT 182056 >seq3424 Length=494560 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| || || | || |||||||| || || | ||| |||| || Sbjct 289066 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAGGCTTC 289125 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || || || ||| |||||||||||| | || || || Sbjct 289126 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 289185 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || ||||||| ||| || ||||||||||| |||| | ||| || | ||||| || Sbjct 289186 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAA 289245 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| |||||||| |||||| ||||| Sbjct 289246 TATTCAAAAGGAATCTACTTTGCACTTGGTG 289276 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || || || | || ||||| || || || | ||| |||||| Sbjct 288838 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 288897 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| ||| ||| || ||||| || | ||| ||||| Sbjct 288898 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 288957 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||||||| ||| || || ||||| || |||| | ||| | | |||||||| Sbjct 288958 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGATTACAA 289017 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| ||||||||||| |||||| | || || | ||| |||| |||| Sbjct 289018 CATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGGAA 289067 Score = 105 bits (116), Expect = 6e-18 Identities = 171/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 110256 TTTATAAGAGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCG 110315 ||| | | ||||| | |||||||| || || ||||||||||| || |||||||| || Sbjct 288594 TTTTTTACAGATTCATCATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACAT 288653 Query 110316 TCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAG 110375 | ||| ||| || ||||| ||| | ||||| |||||| ||||| |||| Sbjct 288654 TGGAAGTGGAAGCTTCTGATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAG 288713 Query 110376 GCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAA 110435 || | || |||||||||||||| |||| || || || || |||| |||| | | Sbjct 288714 GCATCCCTCCAGATCAACAAAGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCA 288773 Query 110436 CAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAG 110495 || | | || || || || || || |||||||| |||||| | || ||| | || | | Sbjct 288774 CACTCTCAGACTATAATATCCAGAAGGAATCTACTTTGCACTTAGTTTTACGTCTAAGGG 288833 Query 110496 GGGGAA 110501 | |||| Sbjct 288834 GTGGAA 288839 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| || || |||||||| |||||| | ||| |||| || Sbjct 289979 ATGCAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACCTTGGAAGTGGAGGCTTCT 290038 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || |||||| ||||| |||||| | || |||||| Sbjct 290039 GACACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 290098 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| |||| || || || || ||||| |||| | ||| || |||| || || Sbjct 290099 CAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATAAT 290158 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || || ||||| ||||| | || || | || |||| |||| Sbjct 290159 ATCCAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGAGGTGGAA 290207 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| || || | || ||||| || || || | ||| ||| || Sbjct 289522 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTC 289581 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || || ||| ||| || ||||| ||| | ||| ||||| Sbjct 289582 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 289641 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||||||| ||| || || ||||| || |||| | ||| | | || ||||| Sbjct 289642 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGACTACAA 289701 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || |||||||| ||||| |||| | | ||| |||| |||| Sbjct 289702 TATTCAGAAGGAATCTACTTTGCATCTGGTACTGCGGCTGAGAGGTGGAA 289751 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || || | || ||||| || || || | ||| ||| || Sbjct 289294 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAAGCTTC 289353 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || || ||| ||| || ||||| || | ||| ||||| Sbjct 289354 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGTATTCCCCCAGATCA 289413 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||||||| ||| || || ||||| || |||| | ||| | | || ||||| Sbjct 289414 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGACTACAA 289473 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || ||||| || |||||| |||| | | ||| |||| |||| Sbjct 289474 TATTCAGAAGGAATCAACTTTGCACCTGGTACTGCGGCTGAGAGGTGGAA 289523 >seq2787 Length=76071 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| | || || ||||| ||||| | ||| || || Sbjct 39963 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 40022 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || || |||||||||||| | || ||||||| Sbjct 40023 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAA 40082 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||||| |||||| || || | || |||| | ||| || | || |||||| Sbjct 40083 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAAC 40142 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 || |||||||||||||| |||||| Sbjct 40143 ATCCAAAAAGAATCTACTTTGCAC 40166 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/247 (68%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 110256 TTTATAAGAGATTT-AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACC 110314 ||| | | |||| | |||||||| || ||||| ||||| | || || ||||||||||| Sbjct 39489 TTTGTTACAGATATCAAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACT 39548 Query 110315 GTCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAA 110374 | ||| || ||| ||||||| | | | |||||| || ||| ||||| ||| Sbjct 39549 TTGGAAGTTGAACCTTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAA 39608 Query 110375 GGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGA 110434 ||| | || ||||||||| | | |||| || || || || |||| || | | Sbjct 39609 GGCATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGC 39668 Query 110435 ACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGA 110494 || | | || || || ||||||||||||||||| | ||| |||| || | || || Sbjct 39669 ACTCTTTCTGACTATAATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGT 39728 Query 110495 GGGGGAA 110501 || |||| Sbjct 39729 GGTGGAA 39735 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | || || || ||||| || | || |||||| | Sbjct 41331 ATGCAGATCTTTGTTAAGACTCTTACTGGGAAGACCATCACTTTGGAGGTGGAGCCATCC 41390 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | || || ||||| || || || ||| | ||| || ||| Sbjct 41391 GACACTATCGAAAATGTTAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAA 41450 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||||||| | ||||||| | | || || |||| || ||| Sbjct 41451 CAGCGTCTCATCTTTGCTGGTAAACAGTTAGAGGATGGCCGCACTCTGTCGGACTATAAC 41510 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || |||||||||||||| ||||| Sbjct 41511 ATCCAAAAAGAATCTACTTTGCA 41533 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||||||||| || |||| ||||| || || || | || |||||| Sbjct 40419 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAGGTGGAGCCATCT 40478 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | ||||| |||||| || ||||| || | ||| |||||| Sbjct 40479 GACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAA 40538 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | ||| || || ||||| || |||| | || || | || |||||| Sbjct 40539 CAACGTCTTATCTTTGCTGGCAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAAC 40598 Query 110453 ATTCAAAAAGAATCTAC 110469 || |||||||| ||||| Sbjct 40599 ATCCAAAAAGAGTCTAC 40615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||||||||| || || || || ||||||||| | ||| || || Sbjct 40647 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 40706 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || || || || || ||| | ||| || ||| Sbjct 40707 GACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAA 40766 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || |||| ||| || || || |||| |||| | || || | |||||||| Sbjct 40767 CAACGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 40826 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||| || || ||||| | ||| | | || || || |||| Sbjct 40827 ATTCAGAAAGAGTCAACCCTGCACTTAGTGCTTCGTCTCCGTGGTGGAA 40875 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||||||||| | || || ||||| || || | ||| ||||| Sbjct 40874 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATC 40933 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || ||| |||||| || || ||||| | || ||||| Sbjct 40934 AGACACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 40993 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | ||||| | || |||||||| ||||| |||| | | || || | || ||||| Sbjct 40994 ACAACGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACAA 41053 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||| || || | ||| |||| | | || ||||| || Sbjct 41054 TATCCAGAAAGAGTCGACCCTTCACTTGGTACTCCGTCTCCGAGGAGG 41101 >seq1305 Length=286731 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || ||||| || | || || |||||||||||| |||| |||| | Sbjct 24985 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTC 24926 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||||| | | | |||||| || || || || ||||| | || || || Sbjct 24925 CGATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCA 24866 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | || | ||| |||||||| || || |||| | ||| || | || ||||| Sbjct 24865 GCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAA 24806 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 ||||||||| ||||| || ||||| | ||| | |||| || || || || Sbjct 24805 CATTCAAAAGGAATCCACATTGCATCTTGTGCTTCGACTTCGCGGAGGTAA 24755 >seq2396 Length=191974 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 103322 AACGGGTTCTACTATTTGGGCCGCAGCGACGAGGTGCGCTGCGCGTTTTGCAAAGTGGAA 103381 || || ||||| ||| |||||||| |||| || || |||||||||||||| ||||| ||| Sbjct 136265 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 136324 Query 103382 ATCATGCGCTGGATGAATGGCGACGACCCGGAGAGCGACCATAAAAAGTGGGCGCCTCGA 103441 || ||| ||| | |||||||| || | | ||||| | |||||||||| Sbjct 136325 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAG 136384 Query 103442 TGCCCGTTTTTGCG 103455 ||||| || ||||| Sbjct 136385 TGCCCTTTCTTGCG 136398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412819919236337