Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3829 163 4e-34 seq3103 158 2e-32 seq3494 114 2e-19 seq3852 91.5 2e-12 >seq3829 Length=1076 Score = 163 bits (180), Expect = 4e-34 Identities = 183/243 (75%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| ||||| || || |||||||||| |||||| |||||| ||| Sbjct 985 TGTACTTGGTGACGGCTTTGGTGCCTTCGCTGACGGCGTGCTTGGCCAACTCGCCGGGCA 926 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| |||||| | ||| | || ||||||| | |||||| ||| Sbjct 925 ACAGGAGCCTCACGGAGGTCTGCACCTCCCTGGACGTGATCGTGGACCTCTTGTTGTAGT 866 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| ||| | ||||||| | |||| || |||| |||||||| || |||||||| Sbjct 865 GGGCGAGTCGCGAC--GCCTCGGCGGCGATACGCTCGAAAATGTCGTTCACGAACGAGTT 808 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||||| ||| ||||||| || ||| ||||| || || |||||||| || Sbjct 807 CATGATGGACATCGCCTTGCTGGAGATTCCGGTGTCCGGGTGGACTTGTTTGAGCACTTT 748 Query 1485708 GTA 1485710 ||| Sbjct 747 GTA 745 >seq3103 Length=1060 Score = 158 bits (174), Expect = 2e-32 Identities = 181/240 (75%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| ||||| || || |||||||||| |||||| |||||| ||| Sbjct 360 TGTACTTGGTGACGGC-TTGGTGCCTTCGCTGACGGCGTGCTTGGCCAACTCGCCGGGCA 302 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| |||||| | ||| | || ||||||| | |||||| ||| Sbjct 301 ACAGGAGCCTCACGGAGGTCTGCACCTCCCTGGACGTGATCGTGGACCTCTTGTTGTAGT 242 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| ||| | ||||||| | |||| || |||| |||||||| || |||||||| Sbjct 241 GGGCGAGTCGCGAC--GCCTCGGCGGCGATACGCTCGAAAATGTCGTTCACGAACGAGTT 184 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||||| ||| ||||||| || ||| ||||| || || ||||||||||| Sbjct 183 CATGATGGACATCGCCTTGCTGGAGATTCCGGTGTCCGGGTGGACTTGTTTGAGCACCTT 124 >seq3494 Length=1266558 Score = 114 bits (126), Expect = 2e-19 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || || ||||||||||| || ||||| ||| ||||| | || || |||||| | | | Sbjct 401875 TATTTAGTGACGGCCTTCGTTCCCTCGCTGACAGCGTGTTTCGCGAGCTCGCCGGGAAGG 401934 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || || |||| |||||| | || | | |||||| | |||||| | || Sbjct 401935 AGGAGACGGACGGAGGTCTGCACTTCCCTCGACGTGATCGTTGACCTCTTGTTGTAGTGC 401994 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||||||| ||||||| |||| || || | || ||||||||||| || ||||| Sbjct 401995 GCCAGGCGGGACGCCTCGGCCGCGATACGTTCAAAAATATCGTTGACAAAGGAATTCATT 402054 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||||| | || | ||||| || ||| ||||| |||||||| | ||| |||||| Sbjct 402055 ATAGACATAGCCTTACTCGAGATCCCAGTGTCCGGGTGAACCTGCTTCAACACTTTGTAA 402114 Query 1485712 A 1485712 | Sbjct 402115 A 402115 >seq3852 Length=1179 Score = 91.5 bits (100), Expect = 2e-12 Identities = 121/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| ||||| || || |||||||||| |||||| |||||| ||| Sbjct 1016 TGTACTTGGTGACGGCTTTGGTGCCTTCGCTGACGGCGTGCTTGGCCAACTCGCCGGGCA 1075 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | || | ||||| |||||| | ||| | || ||||||| | ||||| |||| Sbjct 1076 ACAGGAGCCTCACGGAGGTCTGCACCTCCCTGGACGTGATCGTGGACCTCTTGTTGTAGT 1135 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1485633 | ||| || || ||||||| | |||| || |||| |||||| Sbjct 1136 GGGCG--AGTCGCGACGCCTCGGCGGCGATACGCTCGAAAATGTCG 1179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915788032016651