Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_022266.1 Length=31967 Score E Sequences producing significant alignments: (Bits) Value seq3063 444 1e-120 >seq3063 Length=7092 Score = 444 bits (492), Expect = 1e-120 Identities = 351/421 (83%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 11204 GGTGACCGCGTACGAGCAGACGGTGAACGAGGAGCGGAGCTTTCAGAAAAGCTTCAACAA 11263 ||| |||||||||||||||||||||||| ||||| | |||||| |||||||| ||||| Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731 Query 11264 CCACGTGCGCACCCTGATCGCGCGCGAGGAGGTGGCCATCGGCCTGATGCATCTGTGGGA 11323 |||||||||||| || | ||||||||||||||||| || || ||||||||||||||||| Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791 Query 11324 CTTTGTGGAGGCGTACGTGCAGAACCCGTCGAGCAAGCCGCTGACGGCGCAGTTGTTCCT 11383 |||||| ||| | ||| ||||| ||||||||||| | ||||||| ||||||| Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851 Query 11384 GATCGTGCAGCACAGTCGGGACAACGAGACGTTCCGCGAGGCGATGCTGAACATCGCGGA 11443 || ||||||||||| ||||||||||| | ||| | || ||| |||| ||||| | || Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911 Query 11444 GCCCGAGGGCCGCTGGCTCTTGGACCTGATTAACATCCTGCAGAGCATCGTGGTGCAGGA 11503 |||||||||||||||||| | || |||| ||||| ||||||||||| ||||||||||| Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971 Query 11504 GCGCAGCCTGAGCCTGGCCGACAAGGTGGCGGCCATCAACTACAGCATGTTGAGCCTGGG 11563 ||||||| |||||||||| ||||||||||| ||||| ||||| |||| | || ||||| Sbjct 6972 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 7031 Query 11564 CAAGTTTTACGCCCGCAAGATCTACAAGAGCCCCTACGTGCCCATAGACAAGGAGGTGAA 11623 ||||||||||||||||||||| ||| | | ||| ||||| ||||||||||||||||| || Sbjct 7032 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091 Query 11624 G 11624 | Sbjct 7092 G 7092 Score = 120 bits (132), Expect = 6e-23 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 15385 ATGTACGGCGGCGCCAAGCGGCGCTCCAGCGAGCACCCCGTCCGCGTCCGCGGCCACTAC 15444 |||| ||||| || ||| ||||||| | | ||||| || ||||| ||||| |||||| Sbjct 12 ATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGCGGGCACTAC 71 Query 15445 CGGGCCCCCTGGGGCGCCCACAAGCGCGGCGTCTCCACGCGCACCACCGTCGACGACGCC 15504 || || ||||||||||| ||||| |||||| | | ||||||||||||||| |||||| Sbjct 72 CGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTGGGCGCACCACCGTCGATGACGCC 131 Query 15505 ATCGACGCCGTCGTGG 15520 || ||||| || |||| Sbjct 132 ATTGACGCGGTGGTGG 147 Score = 114 bits (126), Expect = 3e-21 Identities = 356/554 (64%), Gaps = 65/554 (12%) Strand=Plus/Plus Query 15796 CGCCGGGGAAACGTGTACTGGGTGCGAGACGCG---TCGGGCGTGCGCGTGCCGGTGCGC 15852 ||| |||| ||||||||||||||||| ||| || | ||| |||||||||| |||||| Sbjct 468 CGCAGGGGCAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCGC 527 Query 15853 ACCCGCCCCCCTCGGAGTTAGA-----AGACAAAAAGACG--GACGAAGACTGA-----G 15900 ||||||||||| || | |||| ||| |||| || ||| |||| | Sbjct 528 ACCCGCCCCCCGCGCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGTATG 587 Query 15901 TTTCCCT----GTCGTTGCC------AGC-ATGAGCAAGCGCAAGTTCAAAGAAGAGCTG 15949 | ||| | || || ||| ||| ||||||||| ||||||||||| || Sbjct 588 TATCCAGCGGCGGCGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATG 647 Query 15950 CTGGAGGCCCTCGTGCCCGAGATCTACGGCCCGGCCNNNNNNNNNNNNNNNNNNNNNGAC 16009 || ||| | ||| ||| |||||||| ||||| || || Sbjct 648 CTCCAGGTCATCGCGCCGGAGATCTATGGCCC--CCCGAAGAAG-------------GAA 692 Query 16010 GTCAAGCCCGAAGTTAAGCCCCGCGCGCTGAAGCGGGTTAAAAAGCGGGAAAAGAAAGAG 16069 | ||| || |||||||| ||| |||||||| |||||| |||||||||| Sbjct 693 G---AGCAGGATTACAAGCCCCGAAAGCTAAAGCGGGTCAAAAAGA---AAAAGAAAGAT 746 Query 16070 GAGAAGCAGGAAGCAGGGTTGCTAGACGTCGACGACGGCGTGGAGTTCGTGCGGTCCTTC 16129 || | | ||| | ||||||| ||||| | ||| | | Sbjct 747 GATGATGATGAAC---------------TTGACGACGAGGTGGAACTGCTGCACGCAACC 791 Query 16130 GCGCCCCGTCGCCGGGTGCAGTGGCGGGGTCGCCGCGTCAAGCTCGTCCCGCGGCCGGGC 16189 |||||| | || ||||| |||||| ||||| ||||| | | || ||| || ||| Sbjct 792 GCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACGTGTTTTGCGACCCGGC 851 Query 16190 ACCGTGGTGTCTTTCACCCCCGGCCTGCGTTCGGCCACGCGCGGCCTGAAGCGCGAGTAC 16249 ||| || ||| || ||||| ||| || ||| ||| | ||||||| ||| Sbjct 852 ACCACCGTAGTTTTTACGCCCGGTGAGCGCTC---CACCCGCACCTACAAGCGCGTGTAT 908 Query 16250 GACGAGGTCTATGGCGACGAAGACATCCTGGAGCAGGCCGCCCAGCAGCTCGGGGAGTTT 16309 || ||||| || |||||||| ||| | || ||||||||| | ||| |||||||||||| Sbjct 909 GATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCGCCTCGGGGAGTTT 968 Query 16310 GCTTACGGCAAGCG 16323 || ||||| ||||| Sbjct 969 GCCTACGGAAAGCG 982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102167571881682