Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2787 118 7e-22 seq3424 114 8e-21 seq1305 102 5e-17 >seq2787 Length=76071 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || || |||| ||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 40403 CAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 40344 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| |||||| || || ||||| || || ||||| || | || | ||||| ||||| Sbjct 40343 TTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTC 40284 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||| || | | || | ||| || || || || | ||| ||||| Sbjct 40283 TTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGT 40224 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||| || ||||| |||||||| Sbjct 40223 CTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| |||||||| || || || || | |||| |||| |||| ||||||||| || || Sbjct 40838 CTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAA 40779 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || ||||| |||||| | || | |||||||| || | |||||| |||||| | Sbjct 40778 AATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCCTGTATTTTAGCTTTGAC--A 40721 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | ||| | || || || | ||| ||||||||||| || | || || Sbjct 40720 TTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTTTCCAGTCAATGTTTTG 40661 Query 34964 ACAAAGATCTGCAT 34977 ||||| || ||||| Sbjct 40660 ACAAATATTTGCAT 40647 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || || || ||||| |||||||| || || |||| | || ||| Sbjct 39715 ACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCGTCTTCC 39656 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | ||||||||| ||||| |||| ||||| || ||| | || | || |||||||| | Sbjct 39655 AATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 39596 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 ||||| ||| || | | || | || | || || || | || ||||| || Sbjct 39595 ATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGTTTTA 39536 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || || |||||||||||||| Sbjct 39535 CCCGTAAGTGTTTTCACAAAGATCTGCAT 39507 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| |||||||| || ||||| || || | ||| |||| ||||| ||||| || ||||| Sbjct 41294 CTCTTTCTGAATATTGTAGTCAGAAAGAGTACGCCCATCCTCCAGCTGCTTGCCAGCGAA 41235 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || ||||| || ||| | || | ||||| ||||| | || || ||| || Sbjct 41234 AATGAGACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATT 41175 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || || || || || | || || || || || || || |||||||| Sbjct 41174 TTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTTTTCCCTGTCAGTGTCTTTAC 41115 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 41114 AAAGATCTGCAT 41103 >seq3424 Length=494560 Score = 114 bits (126), Expect = 8e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || || || ||||||| ||| || ||||| || |||||||| |||| ||||| || Sbjct 290649 CTGAGAACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTCTGATAATGTGCGCCCA 290590 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||||||||||||||||||| ||||||| ||| || ||| | || | || ||||| Sbjct 290589 TCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTA 290530 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || ||| || || | |||| | ||| || || || || | || || Sbjct 290529 TCTTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATA 290470 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || || || ||||||||||| || |||||| Sbjct 290469 GTTTTCCCAGTCAGTGTCTTTACAAAAATTTGCATG 290434 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTG-AATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 |||| || |||| || ||| |||||||| || | || | ||||||||||| || ||||| Sbjct 289523 TTCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGAT-TCCTTCTGAATATTGTAGTCA 289465 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 ||||| |||| |||| || || |||||||| || || || |||| |||||| ||| | Sbjct 289464 GATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGG 289405 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | ||||| || || | ||||| || || | | || | ||| || || Sbjct 289404 GGAATACCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCC 289345 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || || ||||| || || || ||||||||||| || ||||| Sbjct 289344 ACTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 289295 Score = 107 bits (118), Expect = 1e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| || |||||||| || || ||||| |||| |||| ||||||||||||||| Sbjct 288801 TCCTTCTGGATATTATAGTCTGAGAGTGTGCGCCCATCTTCCAATTGCTTTCCGGCGAAA 288742 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || |||| ||| || ||| | || | || |||||||| | || ||| || ||| | Sbjct 288741 ATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTT 288682 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| || || || || | || ||||| || || || | || ||||| Sbjct 288681 TCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACG 288622 Query 34967 AAGATCTGCATGAT 34980 ||||| |||||||| Sbjct 288621 AAGATTTGCATGAT 288608 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || ||||||||||| | |||| |||| |||||||||||||||||||| Sbjct 290170 CTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAA 290111 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||||| ||| || ||| | || | || |||||||| | || ||| || || Sbjct 290110 AATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTAACATT 290051 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| | ||| ||||| || || | ||| || || || || || | || || || Sbjct 290050 TTCTATTGTGTCAGAAGCCTCCACTTCCAAGGTAATAGTTTTGCCAGTCAATGTTTTCAC 289991 Query 34966 AAAGATCTGCAT 34977 ||| || ||||| Sbjct 289990 AAAAATTTGCAT 289979 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || ||||||||||| | |||| |||| |||||||||||||||||||| Sbjct 290398 CTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAA 290339 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||||| ||| || ||| | || | || ||||| || | || ||| || || Sbjct 290338 AATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTGCCTTAACATT 290279 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| | ||| || || || || | || || || || || || || |||||||| Sbjct 290278 TTCTATTGTATCAGAAGCTTCCACCTCCAAAGTGATAGTTTTCCCAGTCAGTGTCTTTAC 290219 Query 34966 AAAGATCTGCAT 34977 ||| || ||||| Sbjct 290218 AAAAATTTGCAT 290207 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || |||| || ||| ||||| || | || ||||||||||| || ||||| | Sbjct 289751 TTCCACCTCTCAGCCGCAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG 289692 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 |||| |||| |||| || || |||||||| || || || |||| |||||| ||| | | Sbjct 289691 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 289632 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||| || || | ||||| || || | | || | ||| || || | Sbjct 289631 GAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCA 289572 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || || ||||| || || || ||||||||||| || ||||| Sbjct 289571 CTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 289523 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || |||| || || || ||||| | || || ||||||||||| || || | Sbjct 289067 TTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG 289008 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 |||| |||| |||| || || |||||||| || || || |||| |||||| ||| | | Sbjct 289007 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 288948 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||| || || | ||||| ||| || | | || | ||| | ||| | Sbjct 288947 GAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATTGTATCAGAAGGCTCAA 288888 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || || ||||| || || || |||||||| || || ||||| Sbjct 288887 CTTCCAAAGTGATAGTCTTGCCAGTCAGTGTCTTTACGAAAATTTGCAT 288839 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || |||||||| || ||||| ||||| | || |||| || ||||||||||| || || Sbjct 289941 TCTTTCTGAATATTGTAGTCTGATAGTGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAA 289882 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || | ||| |||||| | || | || ||||| || | ||||| || || | Sbjct 289881 ATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTT 289822 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| || ||| || || | || || ||||| || || || ||||| ||| Sbjct 289821 TCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTCACA 289762 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 289761 AATATTTGCAT 289751 >seq1305 Length=286731 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| ||||| || | | || |||| || ||||| || || || ||| Sbjct 24794 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAG 24853 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| |||||||||||| | || | || ||||| || | ||||| ||| || | Sbjct 24854 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTT 24913 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 |||| | || |||||| || || | ||| ||||| || ||||| |||||||| || Sbjct 24914 TCTATAGTATCGGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACG 24973 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 24974 AAAATTTGCAT 24984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325675695937271