Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq2396 255 5e-63
seq3463 167 2e-36
seq3424 107 2e-18
seq1305 98.7 8e-16
seq2787 87.8 1e-12
>seq2396
Length=191974
Score = 255 bits (282), Expect = 5e-63
Identities = 373/520 (72%), Gaps = 22/520 (4%)
Strand=Plus/Plus
Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627
|| || |||| || ||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct 136265 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 136324
Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687
|||||| |||| | ||||||||| || || || || ||| | |||||||| |||
Sbjct 136325 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAG 136384
Query 103688 TGTCCGTTCCTGaaaaaaaCGGCTG---CTGGC---GCGCTGCCCG---CCG-GCCTTGC 103737
|| || ||| || ||| | ||||| | || || || ||| ||| | |
Sbjct 136385 TGCCCTTTCTTGCGGCGGCAGGCGGAATCTGGCAACGTGCCGCGCGAGCCCGCGCCCT-C 136443
Query 103738 GATGG-AC-----GGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTG 103791
| ||| || || || ||||||||||||||| |||||| ||| || | ||| |
Sbjct 136444 GCTGGCACCCGCTGGCCACGACGAGTGCGGCGTGCGCGCGCCCCCGCCCGC----GCCGG 136499
Query 103792 CGTGC-GCATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAA 103850
|| | |||||||||| |||| |||| | || | |||||||||||| | | | | |
Sbjct 136500 CGCCCCGCATGCCCGGTCCCGTGCACGCGCGCTACGCCTCCGAGGCGGCCCGCCTGCGCA 136559
Query 103851 CTTTTAAGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGAT 103910
|| | || ||||| || ||| |||| ||||| || ||| | | |||||||| ||||
Sbjct 136560 GCTTCAGCGACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGAT 136619
Query 103911 TCTACTACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGG 103970
||| |||||||||||| | ||||| || || ||||||||||| ||||| || || ||||
Sbjct 136620 TCTTCTACACCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGACTCAAGG 136679
Query 103971 ATTGGGAGCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCAT 104030
| |||||| |||| || | ||||||| | || ||||||| | || ||| ||||| |
Sbjct 136680 ACTGGGAGAACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCT 136739
Query 104031 ACGTGCTACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070
|||||| || ||||| |||| || || || || |||||
Sbjct 136740 ACGTGCAGCTGGTCAAAGGCCGAGAGTACGTCCAGAAGGT 136779
>seq3463
Length=282612
Score = 167 bits (184), Expect = 2e-36
Identities = 635/988 (64%), Gaps = 23/988 (2%)
Strand=Plus/Minus
Query 29072 TGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCT 29131
||| || || ||||||||||| || ||| | || || || || || | || |
Sbjct 183010 TGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTAT 182951
Query 29132 GCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAA 29191
|| || || | ||| || | ||||| || || || ||||||||||| ||||| ||||
Sbjct 182950 ACCTAATCTTACTCATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGTGACGGCATCAA 182891
Query 29192 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCG 29251
|| | ||| || |||||||| | || || || || || || | |||||
Sbjct 182890 TGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCG 182831
Query 29252 TTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGG 29311
| || ||||||||| | || |||||||| ||||| || |||||||||| ||||| ||
Sbjct 182830 TGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGG 182771
Query 29312 CGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCT 29371
||||| | ||||||||||| |||||||| ||||| || || ||||| | || |
Sbjct 182770 ATTGTCTTCATGGAACGAGCCTTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACA 182711
Query 29372 GGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCC--- 29428
||| || | | || ||||| || || || || || ||||| | |||| ||
Sbjct 182710 AGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTT 182651
Query 29429 GTTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATT 29488
|||| ||| | || | | | | | || |||||| | || || | || ||
Sbjct 182650 CTTCTTTTTAGTTGACAAATCTAAGAGAACACG---ATTTGTGCAGTCAGTAAAGGAGTT 182594
Query 29489 TCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAA 29548
||| | ||||| || || || || || || || || |||||||| || ||||||||
Sbjct 182593 TCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAA 182534
Query 29549 AGGCGCCAACCC-GACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTAC 29607
||| || ||||| ||| || || | | || || | || ||| | |||
Sbjct 182533 AGGTGCTAACCCTGAC-CTCGGTAGCCCAGA---AGATGGTGATTGTTATGTAAGTTTGA 182478
Query 29608 TAAAGGAATTGCGCGCAATGATGGACGAGTTACAATTGCAAACGGGCAAAACGTACGAGT 29667
| || ||||| || | ||| | |||||| | | | | || || | ||||| |
Sbjct 182477 TGAAAGAATTACGTGAGATGCTCGACGAGCTCTCAGCTAAGAATGGTAAGAAATACGAAT 182418
Query 29668 TGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGC 29727
| || || || || | ||| || || || || || | || | | || |
Sbjct 182417 TAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTAGACTATGGCAAGGCTC 182358
Query 29728 AAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACA 29787
|||| | | | ||| | || ||| | ||||| ||||| || || || || ||||||||
Sbjct 182357 AAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAATG 182298
Query 29788 CCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAACTGTACA 29847
| | | || | ||||| | | |||||||| ||||| || || ||| ||||
Sbjct 182297 ACACTCTTGGACATCAAACGCCATTGTACGCGCCAGCGTGGAATCCCAAGGAAACTTACA 182238
Query 29848 ACACGGACCACGCCGTTA---AGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAATTA 29904
| ||| || || | | ||||| || ||||| ||| | || || |||
Sbjct 182237 CATCTGACTTCGGAGTAAAATACTTGCTGGCG---CAGGGAGTGAATCCTAAGAAGATTG 182181
Query 29905 TTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGTGACA 29964
| || || || || ||||| || || |||||||| ||||| || | || || ||||
Sbjct 182180 TAGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGT-TC--ATGATTACAAAGACA 182124
Query 29965 ACTAT---TTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGTTG 30021
|| | || || |||| ||| |||| || || | || |||||| ||||||| || |
Sbjct 182123 ACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGG 182064
Query 30022 TCGACTATCGCCAAATTGAAAACGAAAT 30049
| |||||| | | |||| || |||||
Sbjct 182063 TTGACTATAGGGAGATTGCGAATGAAAT 182036
>seq3424
Length=494560
Score = 107 bits (118), Expect = 2e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
||||||||| ||||| || || | || |||||||| || || | ||| |||||||
Sbjct 289066 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAGGCTTC 289125
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | || || ||| ||| || ||||||||| | || || ||
Sbjct 289126 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 289185
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||| ||||||| ||| || ||||||||||| || | ||| || | || || ||
Sbjct 289186 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAA 289245
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
||||||||||| ||||| |||||| ||||| ||
Sbjct 289246 TATTCAAAAGGAATCTACTTTGCACTTGGTGCTG 289279
Score = 107 bits (118), Expect = 2e-18
Identities = 164/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||||||||| ||||| || || |||||||| |||||| | ||| |||||||
Sbjct 289979 ATGCAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACCTTGGAAGTGGAGGCTTCT 290038
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | || || ||||||| || || |||||| | || |||||
Sbjct 290039 GACACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 290098
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731
|| ||||| |||| || || || || ||||| |||||| ||| || |||||||
Sbjct 290099 CAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGC----ACATTGTCGGACTA 290154
Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
|| || || ||||||||||| ||||| | || ||| | | |||| ||||
Sbjct 290155 TAATATCCAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGAGGTGGAA 290207
Score = 100 bits (110), Expect = 2e-16
Identities = 174/252 (69%), Gaps = 12/252 (5%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
||||||||||||||| || || | || ||||| || || || | ||| ||| |||
Sbjct 289294 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAAGCTTC 289353
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | || || || ||| |||||||| || | ||| |||||
Sbjct 289354 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGTATTCCCCCAGATCA 289413
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730
||| |||||||||| ||| || || ||||| || |||||| ||| | | ||||
Sbjct 289414 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGC----ACACTATCTGACT 289469
Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATA 107790
|||| ||||| ||||| || || |||||| |||| || | || |||| || |||
Sbjct 289470 ACAATATTCAGAAGGAATCAACTTTGCACCTGGTACTGCGGCTGAGAGGTGG----AATG 289525
Query 107791 AAAATATTTGTA 107802
|||||||||||
Sbjct 289526 CAAATATTTGTA 289537
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| || || ||||||||||| || |||||||| || | ||| ||| |||
Sbjct 288611 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 288670
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| ||| | ||||| ||||||| || || |||||| | || |||||
Sbjct 288671 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAA 288730
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| ||||| |||| || || || || |||| || | ||| | | ||||| ||
Sbjct 288731 CAAAGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCACACTCTCAGACTATAAT 288790
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTT 107767
|| || ||||| ||||| |||||| | || ||
Sbjct 288791 ATCCAGAAGGAATCTACTTTGCACTTAGTTTT 288822
Score = 87.8 bits (96), Expect = 1e-12
Identities = 171/252 (68%), Gaps = 12/252 (5%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||||||||| || || || | || ||||| || || || | ||| ||| ||
Sbjct 288838 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 288897
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | || ||| || ||| |||||||| || | ||| |||||
Sbjct 288898 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 288957
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730
||| |||||||||| ||| || || ||||| || |||||| ||| | | || |
Sbjct 288958 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGC----ACACTATCTGATT 289013
Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATA 107790
|||||||||| || || ||||| |||||| | || | | || |||| || |||
Sbjct 289014 ACAACATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGG----AATG 289069
Query 107791 AAAATATTTGTA 107802
|||||||||||
Sbjct 289070 CAAATATTTGTA 289081
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/220 (69%), Gaps = 10/220 (5%)
Strand=Plus/Plus
Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602
|||||||| || ||||||||||||| || || | || || ||||| || || | ||
Sbjct 290196 TAAGAGGTGGAA--TGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGA 290253
Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662
||| ||| ||||| | | | || || ||||||| ||||| |||||| |
Sbjct 290254 GGTGGAAGCTTCTGATACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCAT 290313
Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAA 107718
|| ||||| || ||||| |||| || || || || ||||| |||||| |
Sbjct 290314 TCCTCCAGATCAACAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGC----A 290369
Query 107719 CAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCA 107758
|| || ||||||| || || || ||||||||||| |||||
Sbjct 290370 CATTGTCGGACTATAATATCCAGAAGGAGTCTACTTTGCA 290409
>seq1305
Length=286731
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||||||||| ||||| || | || || |||||||||||| |||| ||||||
Sbjct 24985 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTC 24926
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||||| | | | |||||| || || ||||| ||||| | || || ||
Sbjct 24925 CGATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCA 24866
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||| | | || | ||| |||||||| || || || | ||| || | ||||||||
Sbjct 24865 GCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAA 24806
Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758
|||||||||||| || || |||||
Sbjct 24805 CATTCAAAAGGAATCCACATTGCA 24782
>seq2787
Length=76071
Score = 87.8 bits (96), Expect = 1e-12
Identities = 167/246 (68%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| |||||||| ||||| |||| || || ||||||||| | ||| ||| |
Sbjct 40191 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 40250
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|||||| | | | |||||| || || || ||||| ||| | || ||||||
Sbjct 40251 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 40310
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | ||||| | ||| ||||| || |||| || | || || | |||||||||
Sbjct 40311 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAAC 40370
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795
|| || ||||||||||| | || | || || | ||||||| || || ||||
Sbjct 40371 ATCCAGAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG----TATGCAAAT 40426
Query 107796 ATTTGT 107801
||||||
Sbjct 40427 ATTTGT 40432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398855852610901
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