Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2396 255 5e-63 seq3463 167 2e-36 seq3424 107 2e-18 seq1305 98.7 8e-16 seq2787 87.8 1e-12 >seq2396 Length=191974 Score = 255 bits (282), Expect = 5e-63 Identities = 373/520 (72%), Gaps = 22/520 (4%) Strand=Plus/Plus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 || || |||| || ||||||||||||| ||||| |||||||||||||| ||||| || Sbjct 136265 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 136324 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 |||||| |||| | ||||||||| || || || || ||| | |||||||| ||| Sbjct 136325 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAG 136384 Query 103688 TGTCCGTTCCTGaaaaaaaCGGCTG---CTGGC---GCGCTGCCCG---CCG-GCCTTGC 103737 || || ||| || ||| | ||||| | || || || ||| ||| | | Sbjct 136385 TGCCCTTTCTTGCGGCGGCAGGCGGAATCTGGCAACGTGCCGCGCGAGCCCGCGCCCT-C 136443 Query 103738 GATGG-AC-----GGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTG 103791 | ||| || || || ||||||||||||||| |||||| ||| || | ||| | Sbjct 136444 GCTGGCACCCGCTGGCCACGACGAGTGCGGCGTGCGCGCGCCCCCGCCCGC----GCCGG 136499 Query 103792 CGTGC-GCATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAA 103850 || | |||||||||| |||| |||| | || | |||||||||||| | | | | | Sbjct 136500 CGCCCCGCATGCCCGGTCCCGTGCACGCGCGCTACGCCTCCGAGGCGGCCCGCCTGCGCA 136559 Query 103851 CTTTTAAGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGAT 103910 || | || ||||| || ||| |||| ||||| || ||| | | |||||||| |||| Sbjct 136560 GCTTCAGCGACTGGCCTCGCAGTATGAAGCAGAAGCCTGAGGAACTCGCCGAAGCGGGAT 136619 Query 103911 TCTACTACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGG 103970 ||| |||||||||||| | ||||| || || ||||||||||| ||||| || || |||| Sbjct 136620 TCTTCTACACCGGCCAGGGTGACAAAACTAAGTGCTTCTACTGTGACGGCGGACTCAAGG 136679 Query 103971 ATTGGGAGCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCAT 104030 | |||||| |||| || | ||||||| | || ||||||| | || ||| ||||| | Sbjct 136680 ACTGGGAGAACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCT 136739 Query 104031 ACGTGCTACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 |||||| || ||||| |||| || || || || ||||| Sbjct 136740 ACGTGCAGCTGGTCAAAGGCCGAGAGTACGTCCAGAAGGT 136779 >seq3463 Length=282612 Score = 167 bits (184), Expect = 2e-36 Identities = 635/988 (64%), Gaps = 23/988 (2%) Strand=Plus/Minus Query 29072 TGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCT 29131 ||| || || ||||||||||| || ||| | || || || || || | || | Sbjct 183010 TGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTAT 182951 Query 29132 GCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAA 29191 || || || | ||| || | ||||| || || || ||||||||||| ||||| |||| Sbjct 182950 ACCTAATCTTACTCATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGTGACGGCATCAA 182891 Query 29192 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCG 29251 || | ||| || |||||||| | || || || || || || | ||||| Sbjct 182890 TGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCG 182831 Query 29252 TTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGG 29311 | || ||||||||| | || |||||||| ||||| || |||||||||| ||||| || Sbjct 182830 TGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGG 182771 Query 29312 CGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCT 29371 ||||| | ||||||||||| |||||||| ||||| || || ||||| | || | Sbjct 182770 ATTGTCTTCATGGAACGAGCCTTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACA 182711 Query 29372 GGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCC--- 29428 ||| || | | || ||||| || || || || || ||||| | |||| || Sbjct 182710 AGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTT 182651 Query 29429 GTTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATT 29488 |||| ||| | || | | | | | || |||||| | || || | || || Sbjct 182650 CTTCTTTTTAGTTGACAAATCTAAGAGAACACG---ATTTGTGCAGTCAGTAAAGGAGTT 182594 Query 29489 TCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAA 29548 ||| | ||||| || || || || || || || || |||||||| || |||||||| Sbjct 182593 TCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAA 182534 Query 29549 AGGCGCCAACCC-GACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTAC 29607 ||| || ||||| ||| || || | | || || | || ||| | ||| Sbjct 182533 AGGTGCTAACCCTGAC-CTCGGTAGCCCAGA---AGATGGTGATTGTTATGTAAGTTTGA 182478 Query 29608 TAAAGGAATTGCGCGCAATGATGGACGAGTTACAATTGCAAACGGGCAAAACGTACGAGT 29667 | || ||||| || | ||| | |||||| | | | | || || | ||||| | Sbjct 182477 TGAAAGAATTACGTGAGATGCTCGACGAGCTCTCAGCTAAGAATGGTAAGAAATACGAAT 182418 Query 29668 TGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGC 29727 | || || || || | ||| || || || || || | || | | || | Sbjct 182417 TAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTAGACTATGGCAAGGCTC 182358 Query 29728 AAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACA 29787 |||| | | | ||| | || ||| | ||||| ||||| || || || || |||||||| Sbjct 182357 AAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAATG 182298 Query 29788 CCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAACTGTACA 29847 | | | || | ||||| | | |||||||| ||||| || || ||| |||| Sbjct 182297 ACACTCTTGGACATCAAACGCCATTGTACGCGCCAGCGTGGAATCCCAAGGAAACTTACA 182238 Query 29848 ACACGGACCACGCCGTTA---AGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAATTA 29904 | ||| || || | | ||||| || ||||| ||| | || || ||| Sbjct 182237 CATCTGACTTCGGAGTAAAATACTTGCTGGCG---CAGGGAGTGAATCCTAAGAAGATTG 182181 Query 29905 TTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGTGACA 29964 | || || || || ||||| || || |||||||| ||||| || | || || |||| Sbjct 182180 TAGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGT-TC--ATGATTACAAAGACA 182124 Query 29965 ACTAT---TTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGTTG 30021 || | || || |||| ||| |||| || || | || |||||| ||||||| || | Sbjct 182123 ACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGG 182064 Query 30022 TCGACTATCGCCAAATTGAAAACGAAAT 30049 | |||||| | | |||| || ||||| Sbjct 182063 TTGACTATAGGGAGATTGCGAATGAAAT 182036 >seq3424 Length=494560 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||| || || | || |||||||| || || | ||| ||||||| Sbjct 289066 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAGGCTTC 289125 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || ||| ||| || ||||||||| | || || || Sbjct 289126 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 289185 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||||| ||| || ||||||||||| || | ||| || | || || || Sbjct 289186 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAA 289245 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||||| ||||| |||||| ||||| || Sbjct 289246 TATTCAAAAGGAATCTACTTTGCACTTGGTGCTG 289279 Score = 107 bits (118), Expect = 2e-18 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| ||||| || || |||||||| |||||| | ||| ||||||| Sbjct 289979 ATGCAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACCTTGGAAGTGGAGGCTTCT 290038 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||||| || || |||||| | || ||||| Sbjct 290039 GACACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 290098 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 || ||||| |||| || || || || ||||| |||||| ||| || ||||||| Sbjct 290099 CAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGC----ACATTGTCGGACTA 290154 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || || ||||||||||| ||||| | || ||| | | |||| |||| Sbjct 290155 TAATATCCAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGAGGTGGAA 290207 Score = 100 bits (110), Expect = 2e-16 Identities = 174/252 (69%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || || | || ||||| || || || | ||| ||| ||| Sbjct 289294 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAAGCTTC 289353 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || || ||| |||||||| || | ||| ||||| Sbjct 289354 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGTATTCCCCCAGATCA 289413 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 ||| |||||||||| ||| || || ||||| || |||||| ||| | | |||| Sbjct 289414 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGC----ACACTATCTGACT 289469 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATA 107790 |||| ||||| ||||| || || |||||| |||| || | || |||| || ||| Sbjct 289470 ACAATATTCAGAAGGAATCAACTTTGCACCTGGTACTGCGGCTGAGAGGTGG----AATG 289525 Query 107791 AAAATATTTGTA 107802 ||||||||||| Sbjct 289526 CAAATATTTGTA 289537 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||||||||| || |||||||| || | ||| ||| ||| Sbjct 288611 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 288670 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | ||||| ||||||| || || |||||| | || ||||| Sbjct 288671 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAA 288730 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||| |||| || || || || |||| || | ||| | | ||||| || Sbjct 288731 CAAAGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCACACTCTCAGACTATAAT 288790 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTT 107767 || || ||||| ||||| |||||| | || || Sbjct 288791 ATCCAGAAGGAATCTACTTTGCACTTAGTTTT 288822 Score = 87.8 bits (96), Expect = 1e-12 Identities = 171/252 (68%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || || || | || ||||| || || || | ||| ||| || Sbjct 288838 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 288897 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| || ||| |||||||| || | ||| ||||| Sbjct 288898 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 288957 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 ||| |||||||||| ||| || || ||||| || |||||| ||| | | || | Sbjct 288958 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGC----ACACTATCTGATT 289013 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATA 107790 |||||||||| || || ||||| |||||| | || | | || |||| || ||| Sbjct 289014 ACAACATTCAGAAAGAATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGG----AATG 289069 Query 107791 AAAATATTTGTA 107802 ||||||||||| Sbjct 289070 CAAATATTTGTA 289081 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/220 (69%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || ||||||||||||| || || | || || ||||| || || | || Sbjct 290196 TAAGAGGTGGAA--TGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGA 290253 Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662 ||| ||| ||||| | | | || || ||||||| ||||| |||||| | Sbjct 290254 GGTGGAAGCTTCTGATACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCAT 290313 Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAA 107718 || ||||| || ||||| |||| || || || || ||||| |||||| | Sbjct 290314 TCCTCCAGATCAACAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGC----A 290369 Query 107719 CAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCA 107758 || || ||||||| || || || ||||||||||| ||||| Sbjct 290370 CATTGTCGGACTATAATATCCAGAAGGAGTCTACTTTGCA 290409 >seq1305 Length=286731 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| ||||| || | || || |||||||||||| |||| |||||| Sbjct 24985 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTC 24926 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||||| | | | |||||| || || ||||| ||||| | || || || Sbjct 24925 CGATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCA 24866 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | | || | ||| |||||||| || || || | ||| || | |||||||| Sbjct 24865 GCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAA 24806 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 |||||||||||| || || ||||| Sbjct 24805 CATTCAAAAGGAATCCACATTGCA 24782 >seq2787 Length=76071 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/246 (68%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| ||||| |||| || || ||||||||| | ||| ||| | Sbjct 40191 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 40250 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | |||||| || || || ||||| ||| | || |||||| Sbjct 40251 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 40310 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | ||| ||||| || |||| || | || || | ||||||||| Sbjct 40311 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAAC 40370 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 || || ||||||||||| | || | || || | ||||||| || || |||| Sbjct 40371 ATCCAGAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG----TATGCAAAT 40426 Query 107796 ATTTGT 107801 |||||| Sbjct 40427 ATTTGT 40432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398855852610901