Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2787 159 5e-34 seq3424 123 4e-23 seq1305 107 3e-18 >seq2787 Length=76071 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||| | || ||||||||||||||| | || || ||| | | Sbjct 39964 TGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCTG 40023 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| |||||| ||| |||||||||||||| || ||||||| Sbjct 40024 ACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAAC 40083 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || |||||||| || || |||||||| ||| | | || | | || || || | Sbjct 40084 AACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAACA 40143 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | || |||||| | || |||||||| |||| Sbjct 40144 TCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTTAAGAGGTGGTA 40191 Score = 129 bits (142), Expect = 9e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | |||||| | || || ||||| |||||| | || || |||| | || Sbjct 39508 TGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCTTCCG 39567 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||||||| ||||| ||| || ||||||||||| || ||||||| Sbjct 39568 ATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCAAC 39627 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || || || ||||| || || | || | | || ||||||| Sbjct 39628 AACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACTATAATA 39687 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| ||| | || || ||||| || Sbjct 39688 TTCAAAAAGAATCTACTCTTCACTTGGTATTGCG 39721 Score = 125 bits (138), Expect = 1e-23 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || | ||||||||||| || ||| | || ||||| | || Sbjct 39736 TGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTCCG 39795 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| || || || ||| ||||| || ||||| || ||||||| Sbjct 39796 ACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAAC 39855 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || |||||| |||| ||| | || ||| | |||||||||| Sbjct 39856 AGAGGCTTATTTTTGCTGGAAAACAACTAGAAGATGGCCGTACATTATCTGATTATAATA 39915 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| || | ||||||||||| || Sbjct 39916 TTCAAAAGGAATCTACCCTACATTTAGTATTGCG 39949 Score = 118 bits (130), Expect = 2e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | |||||||| || ||||| || ||||| | || ||||||| | Sbjct 40648 TGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCTG 40707 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| ||||||||| ||| || ||||| || || || |||| Sbjct 40708 ACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAAC 40767 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||||||||| || || ||||| || ||| | | || || | ||||| |||| Sbjct 40768 AACGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAATA 40827 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || || | || ||||| Sbjct 40828 TTCAGAAAGAGTCAACCCTGCACTTAGT 40855 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||||||||| | |||||| | || ||||||||||| ||| | || || || ||| | Sbjct 40876 TGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATCA- 40934 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||| ||| ||| || ||| ||| ||||| ||||| || |||||| Sbjct 40935 GACACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 40994 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | || || || || ||||||||| | || ||| | || | | || || ||| Sbjct 40995 CAACGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACAAT 41054 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || ||||| ||||| | || || ||| | || | ||||||||| Sbjct 41055 ATCCAGAAAGAGTCGACCCTTCACTTGGTACTCCGTCTCCGAGGAGGTA 41103 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| ||| | ||||| ||||| || || | || || |||| | Sbjct 41104 TGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCAG 41163 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| ||| || || ||| ||||| || ||||| || ||||||| Sbjct 41164 ACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAAC 41223 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || || || || | || ||| | || | | || || |||| Sbjct 41224 AACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGGCGTACTCTTTCTGACTACAATA 41283 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || ||||| || ||| | || ||||||||||| ||| ||||||||| Sbjct 41284 TTCAGAAAGAGTCCACTTTGCACTTAGTATTACGTTTACGAGGAGGTA 41331 Score = 109 bits (120), Expect = 9e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| |||| ||||| || ||||| | || || |||| | Sbjct 40192 TGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCTG 40251 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||||||| |||||| ||| ||||| ||||| ||||| ||||| | Sbjct 40252 ATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAGC 40311 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || ||||| ||||| ||||| || ||| | | || | | || || || | Sbjct 40312 AGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAACA 40371 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | || || || || || | ||| ||||| | || | |||| |||| ||||||| Sbjct 40372 TCCAGAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGGTATGCAAATATT 40429 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || | || || || || || ||| | || || || | || Sbjct 41332 TGCAGATCTTTGTTAAGACTCTTACTGGGAAGACCATCACTTTGGAGGTGGAGCCATCCG 41391 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||| || ||| || ||| ||| || |||||||| || || |||| Sbjct 41392 ACACTATCGAAAATGTTAAGGCTAAGATCCAAGATAAGGAGGGCATTCCCCCAGACCAAC 41451 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||| ||||| |||||||| ||||| ||| | || | | || ||||| | Sbjct 41452 AGCGTCTCATCTTTGCTGGTAAACAGTTAGAGGATGGCCGCACTCTGTCGGACTATAACA 41511 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | ||||||||||| ||| | ||||||||| Sbjct 41512 TCCAAAAAGAATCTACTTTGCATTTAGTA 41540 >seq3424 Length=494560 Score = 123 bits (136), Expect = 4e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| ||||| || ||||| || || | || || ||| | | Sbjct 288612 TGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCTG 288671 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||| ||||| || || ||| || |||||||| || || ||||||| Sbjct 288672 ATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAAC 288731 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| || || || ||||| || ||| | || | |||| ||||||| Sbjct 288732 AAAGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCACACTCTCAGACTATAATA 288791 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || ||||| ||| | || ||||| ||||| |||| || || Sbjct 288792 TCCAGAAGGAATCTACTTTGCACTTAGTTTTACGTCTAAGGGGTGG 288837 Score = 120 bits (132), Expect = 5e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| ||| | || || ||||| || ||| | || || ||| | | Sbjct 290208 TGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAGGTGGAAGCTTCTG 290267 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || || || ||| ||| ||||||||||| || ||||||| Sbjct 290268 ATACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAAC 290327 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| || || || ||| | || ||| | || || | || ||||||| Sbjct 290328 AAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATAATA 290387 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | |||||||| || || ||||||| || Sbjct 290388 TCCAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGAGGTGG 290433 Score = 114 bits (126), Expect = 2e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| ||| | || || ||||| || ||| | || || ||| | | Sbjct 290436 TGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCTG 290495 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || || || ||| ||| ||||||||||| || ||||||| Sbjct 290496 ATACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAAC 290555 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| || || || ||| | || ||| | || ||| |||| ||||||| Sbjct 290556 AAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTATCAGACTATAATA 290615 Query 146212 TACAAAAAGAATCGAC 146227 | || |||||||| || Sbjct 290616 TCCAGAAAGAATCTAC 290631 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||||| || || ||||| ||||| | || || || | | Sbjct 289980 TGCAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACCTTGGAAGTGGAGGCTTCTG 290039 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || || || ||| || ||||||||||| || ||||||| Sbjct 290040 ACACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAAC 290099 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| ||||| || || || ||| | || ||| | || || | || ||||||| Sbjct 290100 AAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATAATA 290159 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | |||||||| || || ||||||| || Sbjct 290160 TCCAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGAGGTGG 290205 Score = 109 bits (120), Expect = 9e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| |||| ||| | || || ||||| || || | || || || | | Sbjct 289068 TGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAGGCTTCTG 289127 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || ||||| ||| |||||||||||||| || || |||| Sbjct 289128 ATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCAAC 289187 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || ||||||||||| ||||| | || ||| | || | |||||||||||| Sbjct 289188 AGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAATA 289247 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||| ||| | || || || Sbjct 289248 TTCAAAAGGAATCTACTTTGCACTTGGT 289275 Score = 105 bits (116), Expect = 1e-17 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || ||| | || || || || || || | || || || | | Sbjct 289752 TGCAAATATTTGTGAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTCTG 289811 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || ||||| ||| ||| ||||||||||| || || |||| Sbjct 289812 ACACAATCGAAAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCTCCAGACCAAC 289871 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || |||||||| || || ||| | || ||| | || || |||| || |||| Sbjct 289872 AAAGGCTTATTTTTGCTGGAAAGCAACTTGAGGATGGACGTACACTATCAGACTACAATA 289931 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||| ||| | ||||||||| | || | ||||| || Sbjct 289932 TTCAGAAAGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 289977 >seq1305 Length=286731 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || ||||| ||||| | || || || || Sbjct 24983 TGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTGGAGGCCTCCG 24924 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||||||| |||||| ||| ||| ||||| |||||||| || || | Sbjct 24923 ATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCAGC 24864 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||| |||| ||| | || || | || || || | Sbjct 24863 AACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAACA 24804 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATA 146263 | ||||| ||||| || | ||| | || | ||| | | |||||||| || Sbjct 24803 TTCAAAAGGAATCCACATTGCATCTTGTGCTTCGACTTCGCGGAGGTAACTA 24752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786124055112280