Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq3341 98.7 2e-15
seq4254 96.9 6e-15
seq3424 91.5 3e-13
>seq3341
Length=242222
Score = 98.7 bits (108), Expect = 2e-15
Identities = 155/216 (72%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 143094 GGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTT 143153
|||||||| || |||||| | |||| || ||| |||| ||||| | || || |||
Sbjct 79007 GGTATATGTGACAATTTATTGACATGTACAGTCCGAGCGTGGGACTTCTCAAAGCCACTT 79066
Query 143154 ATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATATA 143213
| || ||||| || ||||| | ||||||||||||||||||||| ||||| |||
Sbjct 79067 GTATTCTGTCCTGCAATGAACACTAGAATGTGGGAACATCCTATTACATCTAAACAAATA 79126
Query 143214 GATGCTTTAAAACATATGGG-TTTCATAGAAATAGAATGCATAGaaaaaaaaC--TAGCC 143270
|||| |||||| || ||| ||||| |||||| | || | || ||||| ||
Sbjct 79127 GATGTTTTAAAGGATTGGGGCTTTCA-AGAAAT-TCCTCCA-ATAAGTAAAACTTTAATG 79183
Query 143271 TGCGGAGACATAGGAAATGGTGCTATGGCAGAAGTT 143306
|| ||||| | ||| ||||| ||||||||||||
Sbjct 79184 TGTGGAGATACAGGTGTTGGTGGAATGGCAGAAGTT 79219
>seq4254
Length=614577
Score = 96.9 bits (106), Expect = 6e-15
Identities = 108/143 (76%), Gaps = 6/143 (4%)
Strand=Plus/Plus
Query 182419 CAGGTAGACGCTCACAATATAGTACCTTGTTGGGAAGCTTCTGACAAAGAAGAATACGGT 182478
|||||||| ||||||||| | || || ||||||| |||||||| ||| | |||||
Sbjct 227669 CAGGTAGATGCTCACAATGTGGTGCCATGTTGGGTGGCTTCTGATAAACAGGAATATTCA 227728
Query 182479 GCAAGAACTTTAAGAAAAAAGATATTTGATAAGTTATATGAATATATGACAGAATTTCCT 182538
|||||||| ||||||| || || | ||| ||| |||||||| | ||||||||||||
Sbjct 227729 GCAAGAACAATAAGAAATAAAATCAATTCTAAATTAGATGAATATCTCACAGAATTTCCT 227788
Query 182539 ---GTTATACGTAAACACCCATA 182558
||||| |||||| || ||
Sbjct 227789 CCAGTTAT---TAAACATCCTTA 227808
>seq3424
Length=494560
Score = 91.5 bits (100), Expect = 3e-13
Identities = 103/140 (74%), Gaps = 11/140 (8%)
Strand=Plus/Minus
Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------ 81696
|| |||| |||||||||| |||||||| || || || || | | ||||| ||
Sbjct 288811 CAAAGTAGATTCCTTCTGGATATTATAGTCTGAGAGTGTGCGCCCATCTTCCAATTGCTT 288752
Query 81697 -----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751
| || ||||||||||||||| ||||| | || ||||||| ||||||||||||||
Sbjct 288751 TCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTGC 288692
Query 81752 TTTTATATTTTCAATCGTAT 81771
|||| ||||| || ||||
Sbjct 288691 CTTTACGTTTTCGATTGTAT 288672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903362540014240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |