Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq3341 98.7 2e-15 seq4254 96.9 6e-15 seq3424 91.5 3e-13 >seq3341 Length=242222 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 143094 GGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTT 143153 |||||||| || |||||| | |||| || ||| |||| ||||| | || || ||| Sbjct 79007 GGTATATGTGACAATTTATTGACATGTACAGTCCGAGCGTGGGACTTCTCAAAGCCACTT 79066 Query 143154 ATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATATA 143213 | || ||||| || ||||| | ||||||||||||||||||||| ||||| ||| Sbjct 79067 GTATTCTGTCCTGCAATGAACACTAGAATGTGGGAACATCCTATTACATCTAAACAAATA 79126 Query 143214 GATGCTTTAAAACATATGGG-TTTCATAGAAATAGAATGCATAGaaaaaaaaC--TAGCC 143270 |||| |||||| || ||| ||||| |||||| | || | || ||||| || Sbjct 79127 GATGTTTTAAAGGATTGGGGCTTTCA-AGAAAT-TCCTCCA-ATAAGTAAAACTTTAATG 79183 Query 143271 TGCGGAGACATAGGAAATGGTGCTATGGCAGAAGTT 143306 || ||||| | ||| ||||| |||||||||||| Sbjct 79184 TGTGGAGATACAGGTGTTGGTGGAATGGCAGAAGTT 79219 >seq4254 Length=614577 Score = 96.9 bits (106), Expect = 6e-15 Identities = 108/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 182419 CAGGTAGACGCTCACAATATAGTACCTTGTTGGGAAGCTTCTGACAAAGAAGAATACGGT 182478 |||||||| ||||||||| | || || ||||||| |||||||| ||| | ||||| Sbjct 227669 CAGGTAGATGCTCACAATGTGGTGCCATGTTGGGTGGCTTCTGATAAACAGGAATATTCA 227728 Query 182479 GCAAGAACTTTAAGAAAAAAGATATTTGATAAGTTATATGAATATATGACAGAATTTCCT 182538 |||||||| ||||||| || || | ||| ||| |||||||| | |||||||||||| Sbjct 227729 GCAAGAACAATAAGAAATAAAATCAATTCTAAATTAGATGAATATCTCACAGAATTTCCT 227788 Query 182539 ---GTTATACGTAAACACCCATA 182558 ||||| |||||| || || Sbjct 227789 CCAGTTAT---TAAACATCCTTA 227808 >seq3424 Length=494560 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/140 (74%), Gaps = 11/140 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------ 81696 || |||| |||||||||| |||||||| || || || || | | ||||| || Sbjct 288811 CAAAGTAGATTCCTTCTGGATATTATAGTCTGAGAGTGTGCGCCCATCTTCCAATTGCTT 288752 Query 81697 -----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 | || ||||||||||||||| ||||| | || ||||||| |||||||||||||| Sbjct 288751 TCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTTGC 288692 Query 81752 TTTTATATTTTCAATCGTAT 81771 |||| ||||| || |||| Sbjct 288691 CTTTACGTTTTCGATTGTAT 288672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903362540014240