Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3463 215 5e-51 seq2787 102 8e-17 seq3345 96.9 3e-15 seq3424 95.1 1e-14 seq2299 82.4 7e-11 >seq3463 Length=282612 Score = 215 bits (238), Expect = 5e-51 Identities = 775/1199 (65%), Gaps = 25/1199 (2%) Strand=Plus/Minus Query 24794 GTGGCGGCGTACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGTG 24853 |||| || ||||| || || |||||||| || || | | || ||||| || | Sbjct 183015 GTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATA 182956 Query 24854 CCCGCGCCCAACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGC 24913 || || || || | || ||||||||||||||| | || || |||||||| | ||| Sbjct 182955 CCTATACCTAATCTTACTCATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGTGACGGC 182896 Query 24914 ATCAACGATGCGCTAAAAACTGTGCCGGGCAGCTTCGAGGCGCTGCAACGATCGTGCGCC 24973 ||||| ||| ||||| | ||||| ||| | || || || || || || | Sbjct 182895 ATCAATGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGC 182836 Query 24974 GGCCGCGCCGACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACCGCAG 25033 ||||| | |||||||| || | ||||||||||| ||||| || |||| ||||| || Sbjct 182835 GGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAA 182776 Query 25034 AAAGGCGTGTCCGCGTGGAACGAGCCGTACAAGGGCAACTTTGGCCAGCTGATGGCGCTG 25093 ||||| |||| | ||||||||||| ||||| |||||||||||||| | ||| | || Sbjct 182775 AAAGGATTGTCTTCATGGAACGAGCCTTACAAAGGCAACTTTGGCCAATTAATGTCACTA 182716 Query 25094 AAGCGCGCCTACCCGCACCTCAAAGTGCTGCCCTCGATCGGCGGCTGGACGCTGTCCGAC 25153 || | ||| ||| | | || | || ||||| || || || |||||||| |||| Sbjct 182715 AAACAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGAT 182656 Query 25154 CCGTTCTTCCACATGCACGACAAGGCGGCGCGCCAGACG-TTTATCGACTCGGTGCAAGA 25212 || |||||| | ||||| | | | | ||| ||| | | || || | || Sbjct 182655 CCTTTCTTCTTTTTAGTTGACAAATCTAAGAG-AACACGATTTGTGCAGTCAGTAAAGGA 182597 Query 25213 GTACCTCGTCACCTGGAAGTTCTTTGACGGCGTCGACCTCGATTGGGAGTTTCCCGGCGG 25272 || || | || ||||| ||||| || || || || ||||||||||||| || || || Sbjct 182596 GTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGG 182537 Query 25273 CAAGGGCGCCAACCCGGACGTGGGCAACGCCGAGCGCGATCGCGCCACCTACACTACCCT 25332 ||| || || ||||| ||| | || | ||| || ||| | | || | | Sbjct 182536 CAAAGGTGCTAACCCTGACCTCGGTA--GCCCAG-AAGATGGTGATTGTTATGTAAGTTT 182480 Query 25333 GTTGGCGGAGCTGCGCGCGATGCTCGACGCGCTCGGTGCCCACCAAAACCGCCACTACCT 25392 | || || | || | ||||||||||| |||| || | | | ||| Sbjct 182479 GATGAAAGAATTACGTGAGATGCTCGACGAGCTCTCAGCTAAGAATGGTAAGAAATACGA 182420 Query 25393 GCTCACTAGCGCGATTAGCGCGGGCAACGACAAGATCGCCGTCGTCGACTACACTGAGGC 25452 | ||| || |||||||| || || || ||| || || ||||| |||| Sbjct 182419 ATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTAGACTATGGCAAGGC 182360 Query 25453 GCAAAAGTATCTCGATCTGATATTCCTCATGTCGTACGATTTTAAGGGCGGCTGGTCGCT 25512 ||||| ||| | |||| || ||| | ||| ||||| || ||||| | |||||| Sbjct 182359 TCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAA 182300 Query 25513 CAACGAGCTCGGTCATCAGACGGCGCTTTACGCGCCCCCGTGGCGGCCCGACGAACCGTA 25572 || || || ||||| ||| | | |||||||| ||||| ||| | ||| | || Sbjct 182299 TGACACTCTTGGACATCAAACGCCATTGTACGCGCCAGCGTGGAATCCCAAGGAAACTTA 182240 Query 25573 CTGCGCGGACCGCGCGGTCGAGGCGCTGCTCGCGCAACACGTG---CCCAAGAACAAGAT 25629 | | ||| || || | |||| ||||| ||| || ||| ||||| Sbjct 182239 CACATCTGACTTCGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAG---AAGAT 182183 Query 25630 TGTGCTGGGCGTTGCCATGTACGGCCGCGGCTGGACGGGCGT---AGCGAGCGACGACAG 25686 ||| | || ||||| ||||| || || || ||||| ||||| | | | |||| Sbjct 182182 TGTAGTAGGTGTTGCTATGTATGGTCGTGGTTGGACTGGCGTTCATGATTACAAAGACA- 182124 Query 25687 CGACAATCCATTCTTGGGCACCGCCACCGGTCCCGTCCCCGGCACCTGGGAGGACGGCGT 25746 ||| ||| ||| |||| ||| || || || ||| || || ||| | ||||| || Sbjct 182123 --ACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGT 182066 Query 25747 CGTCGACTATCGACAGATTGC---TCACAAC-CTCACG--CAGTACACGTACGCGTACGA 25800 || |||||| | ||||||| | | | | |||| | ||| || | ||||| Sbjct 182065 GGTTGACTATAGGGAGATTGCGAATGAAATCGCTCAAGGCAAGTGGGAGTTCCATTACGA 182006 Query 25801 CGACGTTGCCAAGGCGGCGTACATTTATCGCGCATCCGACGG-CAACTTGATTAGCTACG 25859 | | || ||| | || | ||| | | | |||| || | |||| | | ||| | Sbjct 182005 CAATGTCGCCCAAGCCCCTTACGTCTTCAGACCATCAACTGGAGATCTTG-TAACCTATG 181947 Query 25860 ACGACGCTGCCTCGGTCACCGCCAAGGCCAAATATGTATTGGACCACGAGCTGGCCGGTC 25919 | | ||| ||||| | | |||| ||||||||| | || |||| | |||| Sbjct 181946 ATAATGCTAGATCGGTTATTGAAAAGGGTAAATATGTAAGAAATAACAAGCTAGGTGGTC 181887 Query 25920 TGTTTGCCTGGGAAATTGACGCCGACAACGGTGACCTGCTCAACGCCATGAACAAGGGT 25978 | ||||| |||||| | ||||| || ||||||||||| || || |||||||||| |||| Sbjct 181886 TCTTTGCTTGGGAAGTGGACGCTGATAACGGTGACCTACTGAATGCCATGAACATGGGT 181828 >seq2787 Length=76071 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| |||||||| || | || | ||||| ||||||||||| Sbjct 41299 GTGGACTCTTTCTGAATATTGTAGTCAGAAAGAGTACGCCCATCCTCCAGCTGCTTGCCA 41240 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| ||||||| || || || || || || || || || ||||| |||| || |||| Sbjct 41239 GCGAAAATGAGACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATC-TTGGCTTT 41181 Query 133584 AGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | | |||| ||||| | ||| || || || | |||| ||||| || ||||| || Sbjct 41180 AACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTTTTCCCTGTCAGTGT 41121 Query 133643 TTTTACGAAAATCTGCAT 133660 ||||| || |||||||| Sbjct 41120 CTTTACAAAGATCTGCAT 41103 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||||||||| ||||||||||| || ||| ||| | || || | Sbjct 40852 AAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCA-TCTTCCAA 40794 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || ||||||| || || ||||| || |||||||| ||||| || || Sbjct 40793 TTGCTTTCCAGCAAAAATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATC-CTGTA 40735 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | ||| | ||||| | || || || || | ||| | ||| || | Sbjct 40734 TTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTACTTCCAGGGTAATGGTCTTTC 40675 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||||| || || || ||||| Sbjct 40674 CAGTCAATGTTTTGACAAATATTTGCAT 40647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| || || ||| ||| | || || | | Sbjct 40394 ATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA-TCTTCCAATT 40336 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || |||||||| || || |||||||| || ||||| ||| | Sbjct 40335 GCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGAT-T 40277 Query 133576 TTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | | |||| || || | ||| ||||| || | ||| | ||| || || Sbjct 40276 TTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCA 40217 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || ||||||||||| Sbjct 40216 GTTAGGGTTTTAACAAAAATCTGCAT 40191 >seq3345 Length=207354 Score = 96.9 bits (106), Expect = 3e-15 Identities = 251/383 (66%), Gaps = 0/383 (0%) Strand=Plus/Minus Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 ||||| |||||||| || || ||||||| | ||| || || || | || || ||||| Sbjct 112987 GTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATT 112928 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 |||| || || || ||||||||||| | ||| ||| || || || || ||| Sbjct 112927 GGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTGAGGGCAGCC 112868 Query 148431 CAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTA 148490 |||||||| || | || || || |||||| || ||||| || || || |||| Sbjct 112867 CAGTCCCAAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTT 112808 Query 148491 GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCC 148550 || || || || | || | |||||| | || | | || | ||| || || || Sbjct 112807 GCTGGACTCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCT 112748 Query 148551 TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG 148610 || | || || || ||||| || || ||||| ||||| || || ||| Sbjct 112747 TCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCA 112688 Query 148611 CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCA 148670 |||||||| | || | || | ||||||||| || || | |||||| || || | ||| Sbjct 112687 CTTTCGTAAGAAATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCA 112628 Query 148671 ATGGGCCGGTGTTTAATGTTGGA 148693 || || | ||| | || || || Sbjct 112627 ATAGGTCTATGTCTCATATTTGA 112605 >seq3424 Length=494560 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||||| || || |||||||| |||||||| || || ||| ||| ||||| | Sbjct 289956 AAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTG--ATAGTGTACGTCCATCCTCAA 289899 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || || |||| |||| || ||||| ||||| ||||||||||| || ||| Sbjct 289898 GTTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATC-TTGA 289840 Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| | ||| | | || | ||||| | |||||| || || | |||| || ||| Sbjct 289839 ATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCTTG 289780 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || || || || ||||| Sbjct 289779 CCAGTCAGTGTCTTCACAAATATTTGCAT 289751 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| ||||| || || || ||| | | | || || || Sbjct 290184 AAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCA-TCTTCCAG 290126 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| |||| || | || || || ||||| |||||||||||||| || Sbjct 290125 TTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAAT 290066 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | || | ||||| | | |||||| || | ||| | |||||||| Sbjct 290065 CTTTGCCTTAACATTTTCTATTGTGTCAGAAGCCTCCACTTCCAAGGTAATAGTTTTGCC 290006 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||| ||||| Sbjct 290005 AGTCAATGTTTTCACAAAAATTTGCAT 289979 >seq2299 Length=578019 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 116473 CACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAA 116532 || ||||| ||||||||||||||||| |||| || || ||||||||||| || || Sbjct 369294 CATGGCTTTCACGTGCACGAGTTTGGTGACAACACAAATGGCTGCACCTCAGCTGGTCCT 369353 Query 116533 CACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGT 116592 |||||||| || ||||||| || | ||| || | | || | || || ||| Sbjct 369354 CACTTCAATCCTCTAAAAAAGGACCATGGAGGTCCCGACTCGTCGGTCAGACATGTTGGT 369413 Query 116593 GACCTGGGCAACATTGAGGC 116612 ||| |||| ||||||||||| Sbjct 369414 GACTTGGGAAACATTGAGGC 369433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483394761747160