Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3345 194 4e-44 seq2167 114 3e-20 >seq3345 Length=207354 Score = 194 bits (214), Expect = 4e-44 Identities = 434/645 (67%), Gaps = 15/645 (2%) Strand=Plus/Plus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || ||||| ||| ||| || || || ||| ||||||||||||| |||| || | ||| Sbjct 111777 TCCTGCTTCCTTATAGCTATGAAAGACGATAGCATTGAAGGTATTTTTGATACTTTAAAA 111836 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGT----ATTCACGTT-CATGATA 110634 || ||| | ||||||||| |||| || || ||| || ||| || ||| | | Sbjct 111837 CAATGTGCATTAATTTCTAAATCTGCTGGTGGCATAGGTTTACATACACATTGCATCAGA 111896 Query 110635 TTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAA 110694 ||||| || | | || || | || || | || | ||| || || |||| Sbjct 111897 ---GCTCAG--GGTTCTTACATAGCTGGCACTAATGGGGTCTCGAATGGTCTAGTGCCAA 111951 Query 110695 TGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---G 110751 |||| ||||| | ||| | ||||| | |||||| |||||||||| || | | | | Sbjct 111952 TGTTGAGAGTGTATAACAATACTGCCAGATATGTAGATCAAGGTGGAAACAAACGTCCCG 112011 Query 110752 GCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTC 110811 | ||||||| || ||| | || ||||||||| |||| |||||||||||||| || | Sbjct 112012 GTGCATTTGCGATTTATTTAGAGCCTTGGCATGCAGACATATTTGAATTCTTGGATTTAA 112071 Query 110812 GTAAAAATCAAGGATTTG-AAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATT 110870 || || || || | | ||||| ||||| | || | |||||||| | ||||| Sbjct 112072 AGAAGAA-CACGGGTAAGGAAGAAATGAGAGCTAGAGAACTGTTTTATGCCTTATGGATA 112130 Query 110871 TCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCAT 110930 ||||| | || |||||| | || || | ||| | ||| ||| |||||||||||| Sbjct 112131 CCAGATCTGTTTATGAAAAGAGTAGAAAAGGATGAAGTTTGGAGTCTCATGTGTCCTCAT 112190 Query 110931 CGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATAT 110990 || |||||| || |||| | |||| | || |||||||| || || | |||||| Sbjct 112191 GATTGTCCTGGCCTCGCTGACTGCTTTGGAGAGGAATTTGAAGAACTATATGCCAAATAT 112250 Query 110991 GAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTT 111050 ||| ||||| ||| |||||| | ||||||||| | ||| ||| | Sbjct 112251 GAAGAAGAAAAACGATTTATAAAACAAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATA 112310 Query 111051 GAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAA 111110 ||| | ||||| || ||||| || || || || |||||||| ||| | ||| | || Sbjct 112311 GAAGCCCAAGTAGAGACTGGTACACCATACATGTTGTATAAGGATGCTTGTAACAGAAAG 112370 Query 111111 TCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 |||||||| ||| | || || ||||| | ||| ||| | ||| Sbjct 112371 AGTAATCAAAAAAATCTTGGCACTATTAAATGTAGCAATCTTTGC 112415 >seq2167 Length=747338 Score = 114 bits (126), Expect = 3e-20 Identities = 340/510 (67%), Gaps = 26/510 (5%) Strand=Plus/Minus Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCA 305047 ||||||||||| || | || |||| ||||| |||||||| || ||||| ||| ||| Sbjct 220832 AAAGGTAAAGAAGGGAGAATCAGAGGAAATCTTATGGGAAAGCGAGTTGACTTTTCTGCC 220773 Query 305048 AGAAGTGTAATCACACCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGA 305106 |||| |||||||| |||||| || || ||| || || || || ||||||| || Sbjct 220772 AGAACCGTAATCACTCCTGATCCT-AATTTACGTATTGATCAAGTAGGAGTGCCTCGCTC 220714 Query 305107 AATTGCTTTAAAACTAACATTTCCAGAGAAAGTTA-ACGAGAAAAATATTAAACATTTG- 305164 |||||| ||| ||||||| ||||| ||| | || | || ||| | | || Sbjct 220713 TATTGCTCAAAATTTAACATTCCCAGAACTAGTAACACCATTTAA-TATAGACCGAATGC 220655 Query 305165 AGACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACAC 305224 || |||| |||| || |||||| ||||||||||||| |||| | | Sbjct 220654 AGGAGTTG-GTTCGTAGGGGAAATGCGCAGTATCCAGGTGCAAAG-----TATATAGTCC 220601 Query 305225 AAGCAAAAGAAGACA----ATATCTTTGAACCATATCGATTTAAAACAATTCAGTAAAAT 305280 || || | ||| | | ||||| | | || || ||| | || ||| | | Sbjct 220600 GAGATAATGGAGAAAGAATAGATCTTAGG----TTTC-ATCCAAAGCCAT-CAG--ATTT 220549 Query 305281 GC-TTGAAATTAATGATATT--GTTATCAGACATTTGAATGACAATGATTGGGTTCTGTT 305337 || || | | || |||| || | || |||| ||| | |||| |||| | || Sbjct 220548 GCATTTACAATATGGATACAAAGTGGAGCGTCACTTGAGAGACGACGATTTGGTTATTTT 220489 Query 305338 CAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATC 305397 |||| | || ||| | |||| |||||| |||||||| ||| | || |||||||| | Sbjct 220488 CAATCGACAGCCAACTTTGCACAAAATGAGTATGATGGGTCACAGGGTGAAAGTATTGCC 220429 Query 305398 TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGG 305457 | | |||||||| | ||| | ||| | |||| || ||||| |||||||| || Sbjct 220428 GTGGTCTACATTTCGTATGAATTTGAGTTGCACTTCGCCATACAATGCTGATTTTGACGG 220369 Query 305458 AGATGAAATGAATATGCATGTACCTCAATC 305487 || ||||||||| | |||||||||||||| Sbjct 220368 CGACGAAATGAATTTACATGTACCTCAATC 220339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186747277177949